2016 Publications

Jan 1, 2016

2016 Publications

Allam, Bassem

  • Liu, Q., Collier, J. L., & Allam, B. (2016). Seasonality of QPX disease in the Raritan Bay (NY) wild hard clam (Mercenaria mercenaria) population. Aquaculture Research.

Aller, Josie

Aller, Robert

Beaupré, Steven

  • Soulet, G., Skinner, L. C., Beaupré, S. R., & Galy, V. (2016). A Note on Reporting of Reservoir 14 C Disequilibria and Age Offsets. Radiocarbon, 1-7.

Black, David

Bokuniewicz, Henry

Bowman, Malcolm

Brownawell, Bruce

Cerrato, Robert

Chang, Edmund

Chapman, Demian

Cochran, Kirk

Colle, Brian

Collier, Jackie

  • Liu, Q., Collier, J. L., & Allam, B. (2016). Seasonality of QPX disease in the Raritan Bay (NY) wild hard clam (Mercenaria mercenaria) population. Aquaculture Research.

Conover, David

Dheilly, Nolwenn

Fisher, Nicholas

Flagg, Charles

Flood, Roger

French, Michael

Frisk, Michael

  • Martinez, C. M., Rohlf, F. J. and Frisk, M. G. (2016), Sexual dimorphism in sister species of Leucoraja skate and its relationship to reproductive strategy and life history. Evolution & Development. doi: 10.1111/ede.12175

Geller, Marvin

Gobler, Chris

Hameed, Sultan

Khairoutdinov, Marat

Kim, Hyemi

Knopf, Daniel

Lee, Cindy

Levinton, Jeffrey

Liu, Ping

Lwiza, Kamazima

Lynch, Heather

Mak, John

McElroy, Anne

Nye, Janet

Padilla, Dianna

Pales-Espinosa, Emmanuelle

Peterson, Bradley

  • Stubler, A. D., Stevens, A. K., & Peterson, B. J. (2016). Using community-wide recruitment and succession patterns to assess sediment stress on Jamaican coral reefs. Journal of Experimental Marine Biology and Ecology,474, 29-38.

Pikitch, Ellen

Price, Roy

  • Godelitsas, A., Price, R. E., Pichler, T., Amend, J., Gamaletsos, P., & Göttlicher, J. (2015). Amorphous As-sulfide precipitates from the shallow-water hydrothermal vents off Milos Island (Greece). Marine Chemistry, 177, 687-696.

Reed, Kevin

Swanson, Larry

Taylor, Gordon

Thorne, Lesley

Volkenborn, Nils

Wang, Dong-Ping

Warren, Joe

Wehrmann, Laura

Wilson, Robert

Wolfe, Christopher

Zhang, Minghua

Weinstein, A., Navarrete, L., Ruppel, C., Weber, T.C., Leonte, M., Kellermann, M.Y., Arrington, E.C., Valentine, D.L., Scranton, M.I. and Kessler, J.D., 2016. Determining the flux of methane into Hudson Canyon at the edge of methane clathrate hydrate stability. Geochemistry, Geophysics, Geosystems, 17(10), pp.3882-3892.

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Wu, C., Lin, Z., He, J., Zhang, M., Liu, X., Zhang, R., & Brown, H. (2016). A process‐oriented evaluation of dust emission parameterizations in CESM: Simulation of a typical severe dust storm in East Asia. Journal of Advances in Modeling Earth Systems, 8(3), 1432-1452.

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Geller, M. A., Zhou, T., Shindell, D., Ruedy, R., Aleinov, I., Nazarenko, L., … & Field, R. D. (2016). Modeling the QBO–Improvements Resulting from Higher Model Vertical Resolution. Journal of Advances in Modeling Earth Systems.

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Tang, T., & Lee, C. (2016). The role of surface layer proteins in the degradation of a photosynthetic prokaryote, the cyanobacterium Synechococcus sp. Marine Chemistry, 186, 33-45.

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Harke, M. J., Jankowiak, J. G., Morrell, B. K., & Gobler, C. J. (2016). Transcriptomic responses in the bloom-forming cyanobacterium Microcystis induced during exposure to zooplankton. Applied and Environmental Microbiology, AEM-02832.

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Gobler, C. J., Clark, H. R., Griffith, A. W., & Lusty, M. W. (2016). Diurnal Fluctuations in Acidification and Hypoxia Reduce the Growth and Survival of Larval and Juvenile Bay Scallops (Argopecten irradians) and Hard Clams (Mercenaria mercenaria). Frontiers in Marine Science, 3, 282.

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Moffet, R.C., O’Brien, R.E., Alpert, P.A., Kelly, S.T., Pham, D.Q., Gilles, M.K., Knopf, D.A. and Laskin, A., 2016. Morphology and mixing of black carbon particles collected in central California during the CARES field study. Atmospheric Chemistry and Physics, 16(22), pp.14515-14525.

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Duplisea, D. E., Frisk, M. G., & Trenkel, V. M. (2016). Extinction Debt and Colonizer Credit on a Habitat Perturbed Fishing Bank. PloS one, 11(11), e0166409.

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Li, L., Liu, H., Wang, L., Yue, S., Tong, X., Zaliznyak, T., Taylor, G.T. and Wong, S.S., 2016. Chemical Strategies for Enhancing Activity and Charge Transfer in Ultrathin Pt Nanowires Immobilized onto Nanotube Supports for the Oxygen Reduction Reaction. ACS applied materials & interfaces, 8(50), pp.34280-34294.

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Acharya, B., Alexandre, J., Baines, S., Benes, P., Bergmann, B., Bernabéu, J., … & de Montigny, M. (2016). Search for magnetic monopoles with the MoEDAL forward trapping detector in 13 TeV proton-proton collisions at the LHC. arXiv preprint arXiv:1611.06817.

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Gownaris, N. J., Pikitch, E. K., Aller, J. Y., Kaufman, L. S., Kolding, J., Lwiza, K. M., … & Rountos, K. J. (2016). Fisheries and water level fluctuations in the world’s largest desert lake. Ecohydrology.

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Oue, M., P. Kollias, K. W. North, A. Tatarevic, S. Endo, A. M. Vogelmann, and W. I. Gustafson (2016): Estimation of cloud fraction profile in shallow convection using a scanning cloud radar. Geophysical Research Letters, 43,10998–11006, doi: 10.1002/2016GL070776.

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Yu, J. (2016). A terrain-following model of wave boundary layers. Ocean Modelling, 108, 20-29.

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Zeng, Y., Walker, H., & Zhu, Q. (2016). Reduction of nitrate by NaY zeolite supported Fe, Cu/Fe and Mn/Fe nanoparticles. Journal of Hazardous Materials.

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Swanson, R. L., & Bowman, M. J. (2016). Between Stony Brook Harbor Tides: The Natural History of a Long Island Pocket Bay. SUNY Press.

Swanson, R. L., & Bowman, M. J. (2016). Between Stony Brook Harbor Tides: The Natural History of a Long Island Pocket Bay. SUNY Press.

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Tang, S., Xie, S., Zhang, Y., Zhang, M., Schumacher, C., Upton, H., … & Feng, Z. (2016). Large-scale vertical velocity, diabatic heating and drying profiles associated with seasonal and diurnal variations of convective systems observed in the GoAmazon2014/5 experiment. Atmospheric Chemistry and Physics, 16(22), 14249-14264.

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Lynch, M. A., Foley, C. M., Thorne, L. H., & Lynch, H. J. (2016). Improving the use of biological data in Antarctic management. Antarctic Science, 28(6), 425-431.

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Pendergrass, A. G., Reed, K. A., & Medeiros, B. (2016). The link between extreme precipitation and convective organization in a warming climate: Global radiative‐convective equilibrium simulations. Geophysical Research Letters, 43(21).

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Ohnemus, D.C., Rauschenberg, S., Krause, J.W., Brzezinski, M.A., Collier, J.L., Geraci-Yee, S., Baines, S.B. and Twining, B.S., 2016. Silicon content of individual cells of Synechococcus from the North Atlantic Ocean. Marine Chemistry, 187, pp.16-24.

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Kulp, R. E., & Peterson, B. J. (2016). Evaluating the Impact of Mesopredators on Oyster Restoration in the New York Metropolitan Region. Journal of Shellfish Research, 35(4), 801-807.

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Molthan, A. L., Colle, B. A., Yuter, S. E., & Stark, D. (2016). Comparisons of Modeled and Observed Reflectivities and Fall Speeds for Snowfall of Varied Riming Degrees during Winter Storms on Long Island, New York. Monthly Weather Review, 144(11), 4327-4347.

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Fields, A. T., Feldheim, K. A., Gelsleichter, J., Pfoertner, C., & Chapman, D. D. (2016). Population structure and cryptic speciation in bonnethead sharks Sphyrna tiburo in the south‐eastern USA and Caribbean. Journal of Fish Biology, 89(5), 2219-2233.

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Clark, H. R., & Gobler, C. J. (2016). Diurnal fluctuations in CO2 and dissolved oxygen concentrations do not provide a refuge from hypoxia and acidification for early-life-stage bivalves. Marine Ecology Progress Series, 558, 1-14.

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Baumann, H., and J. Nye (2016). Laboratory study of long-term growth in juvenile Menidia menidia (Atlantic silverside) at contrasting CO2 levels for 16 to 122 days in 2015. Biological and Chemical Oceanography Data Management Office (BCO-DMO). http://www.bco-dmo.org/dataset/651461/data

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Price, R. E., Breuer, C., Reeves, E., Bach, W., & Pichler, T. (2016). Arsenic bioaccumulation and biotransformation in deep-sea hydrothermal vent organisms from the PACMANUS hydrothermal field, Manus Basin, PNG. Deep Sea Research Part I: Oceanographic Research Papers, 117, 95-106.

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Levinton, J. S. (2016). Bilateral linkage of monomorphic and dimorphic limb sizes in fiddler crabs. Biological Journal of the Linnean Society.

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Walker, B. D., Primeau, F. W., Beaupré, S. R., Guilderson, T. P., Druffel, E. R. M., & McCarthy, M. D. (2016). Linked changes in marine dissolved organic carbon molecular size and radiocarbon age. Geophysical Research Letters, 43(19).

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Babcock Jr, R. W., Wellbrock, A., Slenders, P., & Radway, J. C. (2015). Improving mass transfer in an inclined tubular photobioreactor. Journal of Applied Phycology, 1-9.

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Jordi, A., Wang, D. P., & Hamilton, P. (2016). Near-inertial motions in the DeSoto Canyon during Hurricane Georges. Ocean Modelling, 105, 34-43.

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D’Elia, M., Warren, J. D., Rodriguez-Pinto, I., Sutton, T. T., Cook, A., & Boswell, K. M. (2016). Diel variation in the vertical distribution of deep-water scattering layers in the Gulf of Mexico. Deep Sea Research Part I: Oceanographic Research Papers.

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Beaupré, S. R., Mahmoudi, N., & Pearson, A. (2016). IsoCaRB: A novel bioreactor system to characterize the lability and natural carbon isotopic (14C, 13C) signatures of microbially respired organic matter. Limnology and Oceanography: Methods, 14(10), 668-681.

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Dahl, S. F. and Allam, B. (2015), Hard clam relocation as a potential strategy for QPX disease mitigation within an enzootic estuary. Aquaculture Research. doi: 10.1111/are.12793

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Rubin, E., Werneburg, G. T., Espinosa, E. P., Thanassi, D. G., & Allam, B. (2016). Identification and characterization of peptidases secreted by quahog parasite unknown (QPX), the protistan parasite of hard clams. Diseases of aquatic organisms, 122(1), 21-33.

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Kang, Y., Tang, Y. Z., Taylor, G. T., & Gobler, C. J. (2016). Discovery of a resting stage in the harmful, brown tide‐causing pelagophyte, Aureoumbra lagunensis: a mechanism potentially facilitating recurrent blooms and geographic expansion. Journal of Phycology.

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Lee, C. S., Lutcavage, M. E., Chandler, E., Madigan, D. J., Cerrato, R. M., & Fisher, N. S. (2016). Declining Mercury Concentrations in Bluefin Tuna Reflect Reduced Emissions to the North Atlantic Ocean. Environmental Science & Technology.

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Yi, W., Nozick, L., Davidson, R., Blanton, B., & Colle, B. (2017). Optimization of the issuance of evacuation orders under evolving hurricane conditions. Transportation Research Part B: Methodological, 95, 285-304.

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Urmy, S. S., & Warren, J. D. (2016). Quantitative ornithology with a commercial marine radar: standard‐target calibration, target detection and tracking, and measurement of echoes from individuals and flocks. Methods in Ecology and Evolution.

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Fang, M., Albrecht, B., Jung, E., Kollias, P., Jonsson, H., & PopStefanija, I. (2016). Retrieval of Vertical Air Motion in Precipitating Clouds Using Mie Scattering and Comparison with in-situ Measurements. Journal of Applied Meteorology and Climatology, (2016).

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Owen, K., Kavanagh, A. S., Warren, J. D., Noad, M. J., Donnelly, D., Goldizen, A. W., & Dunlop, R. A. (2016). Potential energy gain by whales outside of the Antarctic: prey preferences and consumption rates of migrating humpback whales (Megaptera novaeangliae). Polar Biology, 1-13.

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Colle, B. A., Naeger, A. R., & Molthan, A. (2016). Structure and Evolution of a Warm Frontal Precipitation Band During the GPM Cold Season Precipitation Experiment (GCPEx). Monthly Weather Review, (2016).

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Sanderson, E. W., Orton, P., Fischbach, J. R., Knopman, D., Roberts, H., Solecki, W. D., & Wilson, R. (2016). Computational Modeling of the Jamaica Bay System. In Prospects for Resilience (pp. 167-191). Island Press/Center for Resource Economics.

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Walker, B. D., Beaupré, S. R., Guilderson, T. P., McCarthy, M. D., & Druffel, E. R. M. (2016). Pacific carbon cycling constrained by organic matter size, age and composition relationships. Nature Geoscience.

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Wang, B., Knopf, D. A., China, S., Arey, B., Harder, T. H., Gilles, M. K., & Laskin, A. (2016). Direct observation of ice nucleation events on individual atmospheric particles, Phys. Chem. Chem. Phys.,, 18, 29721-29731

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Baumann, Z., Mason, R.P., Conover, D.O., Balcom, P., Chen, C.Y., Buckman, K.L., Fisher, N.S. and Baumann, H., 2016. Mercury bioaccumulation increases with latitude in a coastal marine fish (Atlantic silverside, Menidia menidia). Canadian Journal of Fisheries and Aquatic Sciences, (999), pp.1-7.

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Wang, C., Baumann, Z., Madigan, D. J., & Fisher, N. S. (2016). Contaminated Marine Sediments As a Source of Cesium Radioisotopes for Benthic Fauna near Fukushima. Environmental Science & Technology, 50(19), 10448-10455.

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Renfro, A. A., Cochran, J. K., Hirschberg, D. J., Bokuniewicz, H. J., & Goodbred, S. L. (2016). The sediment budget of an urban coastal lagoon (Jamaica Bay, NY) determined using 234 Th and 210 Pb. Estuarine, Coastal and Shelf Science, 180, 136-149.

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Lynch, H. J., White, R., Naveen, R., Black, A., Meixler, M. S., & Fagan, W. F. (2016). In stark contrast to widespread declines along the Scotia Arc, a survey of the South Sandwich Islands finds a robust seabird community. Polar Biology, 1-11.

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Finn, D., Chandrasekhar, D. and Xiao, Y. (2016) “Planning for resilience in the New York metro region after Superstorm Sandy” in edited collection Spatial planning and resilience following disasters: International and comparative perspectives, Greiving, Ubaura & Tesliar eds. Bristol: Policy Press. 117-135.

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Morse, R. E., Friedland, K. D., Tommasi, D., Stock, C., & Nye, J. (2016). Distinct zooplankton regime shift patterns across ecoregions of the US Northeast continental shelf Large Marine Ecosystem. Journal of Marine Systems.

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Yu, H., Zhang, M., Lin, W., & Zhang, X. (2016). Cloud transitions: comparison of temporal variation in the southeastern Pacific with the spatial variation in the northeastern Pacific at low latitudes. International Journal of Climatology.

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Rauser, F., M. Alqadi, S. Arowolo, N. Baker, J. Bedard, E. Behrens, N. Dogulu, L.G. Domingues, A. Frassoni, J. Keller, S. Kirkpatrick, G. Langendijk, M. Mirsafa, S. Mohammad, A.K. Naumann, M. Osman, K. Reed, M. Rothmüller, V. Schemann, A. Singh, S. Sonntag, F. Tummon, D. Victor, M.Q. Villafuerte, J.P. Walawender, and M. Zaroug, 2017: Earth System Science Frontiers: An Early Career Perspective. Bull. Amer. Meteor. Soc., 98, 1120–1127, https://doi.org/10.1175/BAMS-D-16-0025.1

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Madigan, D. J., Chiang, W. C., Wallsgrove, N. J., Popp, B. N., Kitagawa, T., Choy, C. A., … & Sun, C. L. (2016). Intrinsic tracers reveal recent foraging ecology of giant Pacific bluefin tuna at their primary spawning grounds. Marine Ecology Progress Series, 553, 253-266.

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Archer, C. L., Colle, B. A., Veron, D. L., Veron, F., & Sienkiewicz, M. J. (2016). On the predominance of unstable atmospheric conditions in the marine boundary layer offshore of the US northeastern coast. Journal of Geophysical Research: Atmospheres, 121(15), 8869-8885.

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Geller, M. A., Zhou, T., & Yuan, W. (2016). The QBO, gravity waves forced by tropical convection, and ENSO. Journal of Geophysical Research: Atmospheres, 121(15), 8886-8895.

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Lee, C. S., & Fisher, N. S. (2016). Methylmercury uptake by diverse marine phytoplankton. Limnology and Oceanography, 61(5), 1626-1639.

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Hannides, A. K., & Aller, R. C. (2016). Priming effect of benthic gastropod mucus on sedimentary organic matter remineralization. Limnology and Oceanography.

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Stubler, A. D., & Peterson, B. J. Ocean acidification accelerates net calcium carbonate loss in a coral rubble community. Coral Reefs, 1-9.

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Chang, E. K., & Yau, A. M. (2016). Northern Hemisphere winter storm track trends since 1959 derived from multiple reanalysis datasets. Climate Dynamics, 47(5-6), 1435-1454.

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Dasgupta, S., Di Giulio, R. T., Drollette, B. D., Plata, D., Brownawell, B. J., & McElroy, A. E. (2016). Hypoxia depresses CYP1A induction and enhances DNA damage, but has minimal effects on antioxidant responses in sheepshead minnow (Cyprinodon variegatus) larvae exposed to dispersed crude oil. Aquatic Toxicology.

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Knoll, K., Landman, N. H., Cochran, J. K., Macleod, K. G., & Sessa, J. A. (2016). Microstructural preservation and the effects of diagenesis on the carbon and oxygen isotope composition of Late Cretaceous aragonitic mollusks from the Gulf Coastal Plain and the Western Interior Seaway. American Journal of Science, 316(7), 591-613.

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Theis, K. R., Dheilly, N. M., Klassen, J. L., Brucker, R. M., Baines, J. F., Bosch, T. C., … & Sapp, J. (2016). Getting the hologenome concept right: An eco-evolutionary framework for hosts and their microbiomes. mSystems, 1(2), e00028-16.

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Stubler, A. D., Jackson, L. J., Furman, B. T., & Peterson, B. J. (2016). Seed Production Patterns in Zostera marina: Effects of Patch Size and Landscape Configuration. Estuaries and Coasts, 1-9.

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Moffet, R. C., O’Brien, R. E., Alpert, P., Kelly, S. T., Pham, D. Q., Gilles, M. K., … & Laskin, A. Morphology and Mixing of BC Particles Collected in Central California During the CARES Field Study.

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Hahn, M. A., & Dheilly, N. M. (2016). Experimental models to study the role of microbes in host-parasite interactions. Frontiers in Microbiology, 7.

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Uno, S., Kokushi, E., Kawano, M., McElroy, A. E., & Koyama, J. (2016). Toxic evaluations of sediments in Tokyo Bay, Japan, using Japanese medaka embryos. Environmental Science and Pollution Research, 1-8.

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Wang, K., Espinosa, E. P., & Allam, B. (2016). Effect of “heat shock” treatments on QPX disease and stress response in the hard clam, Mercenaria mercenaria. Journal of invertebrate pathology, 138, 39-49.

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Rodriguez-Mora, M. J., Edgcomb, V. P., Taylor, C., Scranton, M. I., Taylor, G. T., & Chistoserdov, A. Y. (2016). The diversity of sulfide oxidation and sulfate reduction genes expressed by the bacterial communities of the Cariaco Basin, Venezuela. The open microbiology journal, 10, 140.

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Patton, E. G., Guenther, A. B., Shepson, P. B., Miller, D. O., Brune, W. H., Misztal, P. K., … & Mak, J. E. (2016). Understanding isoprene photooxidation using observations and modeling over a subtropical forest in the southeastern US. Atmospheric Chemistry and Physics, 16(12), 7725.

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Sagarese, S. R., Frisk, M. G., Cerrato, R. M., Sosebee, K. A., Musick, J. A., & Rago, P. J. (2016). Diel Variations in Survey Catch Rates and Survey Catchability of Spiny Dogfish and their Pelagic Prey in the Northeast US Continental Shelf Large Marine Ecosystem. Marine and Coastal Fisheries, 8(1), 244-262.

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Bacmeister, J. T., Reed, K. A., Hannay, C., Lawrence, P., Bates, S., Truesdale, J. E., … & Levy, M. (2016). Projected changes in tropical cyclone activity under future warming scenarios using a high-resolution climate model. Climatic Change, 1-14.

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Swanson, R. L., Lwiza, K., Willig, K., & Morris, K. (2016). Superstorm Sandy marine debris wash-ups on Long Island—What happened to them?. Marine pollution bulletin.

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Breece, M. W., Fox, D. A., Dunton, K. J., Frisk, M. G., Jordaan, A., & Oliver, M. J. (2016). Dynamic seascapes predict the marine occurrence of an endangered species: Atlantic Sturgeon Acipenser oxyrinchus oxyrinchus. Methods in Ecology and Evolution.

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Wehrmann, L.M. and Riedinger, N., 2016. The Sedimentary Deep Subseafloor Biosphere, Reference Module in Earth Systems and Environmental Sciences. Elsevier. http://dx.doi.org/10.1016/B978-0-12-409548-9.09741-4

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Hu, Z., Wang, D. P., Pan, D., He, X., Miyazawa, Y., Bai, Y., … & Gong, F. (2016). Mapping surface tidal currents and Changjiang plume in the East China Sea from Geostationary Ocean Color Imager. Journal of Geophysical Research: Oceans.

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Hall, D. M., Ullrich, P. A., Reed, K. A., Jablonowski, C., Nair, R. D., & Tufo, H. M. (2016). Dynamical Core Model Intercomparison Project (DCMIP) tracer transport test results for CAM‐SE. Quarterly Journal of the Royal Meteorological Society, 142(697), 1672-1684.

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Urmy, S. S., Williamson, C. E., Leach, T. H., Schladow, S. G., Overholt, E. P., & Warren, J. D. (2016). Vertical redistribution of zooplankton in an oligotrophic lake associated with reduction in ultraviolet radiation by wildfire smoke. Geophysical Research Letters, 43(8), 3746-3753.

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Karimi, R., Chen, C. Y., & Folt, C. L. (2016). Comparing nearshore benthic and pelagic prey as mercury sources to lake fish: the importance of prey quality and mercury content. Science of The Total Environment, 565, 211-221.

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Rahman, S., Aller, R. C., & Cochran, J. K. (2016). Cosmogenic 32Si reveals biogenic silica burial in deltas rivals the Southern Ocean siliceous ooze. Geophysical Research Letters, 43, 7124-7142.

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Zhang, M., Somerville, R. C., & Xie, S. (2016). The SCM concept and creation of ARM forcing datasets. Meteorological Monographs, 57, 24-1.

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Madigan, D.J., Chiang, W.C., Wallsgrove, N.J., Popp, B.N., Kitagawa, T., Choy, C.A., Tallmon, J., Ahmed, N., Fisher, N.S. and Sun, C.L., (2016). Intrinsic tracers reveal recent foraging ecology of giant Pacific bluefin tuna at their primary spawning grounds. Marine Ecology Progress Series, 553, pp.253-266.

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Swanson, L., Dorsch, M., Giampieri, M., Orton, P., Parris, A. S., & Sanderson, E. W. (2016). Dynamics of the Biophysical Systems of Jamaica Bay. In Prospects for Resilience (pp. 65-89). Island Press/Center for Resource Economics.

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Harke, M. J., Steffen, M. M., Gobler, C. J., Otten, T. G., Wilhelm, S. W., Wood, S. A., & Paerl, H. W. (2016). A review of the global ecology, genomics, and biogeography of the toxic cyanobacterium, Microcystis spp. Harmful Algae, 54, 4-20.

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Davis, T. W., & Gobler, C. J. (2016). Preface for Special Issue on “Global expansion of harmful cyanobacterial blooms: Diversity, ecology, causes, and controls”. Harmful Algae, 54, 1-3.

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Gobler, C. J., Burkholder, J. M., Davis, T. W., Harke, M. J., Johengen, T., Stow, C. A., & Van de Waal, D. B. (2016). The dual role of nitrogen supply in controlling the growth and toxicity of cyanobacterial blooms. Harmful Algae, 54, 87-97.

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Wang, L., Han, J., Sundahl, B., Thornton, S., Zhu, Y., Zhou, R., Jaye, C., Liu, H., Li, Z.Q., Taylor, G.T. and Fischer, D.A., 2016. Ligand-induced dependence of charge transfer in nanotube–quantum dot heterostructures. Nanoscale, 8(34), pp.15553-15570.

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Thorne, L. H., Conners, M. G., Hazen, E. L., Bograd, S. J., Antolos, M., Costa, D. P., & Shaffer, S. A. (2016). Effects of El Niño-driven changes in wind patterns on North Pacific albatrosses. Journal of The Royal Society Interface, 13(119), 20160196.

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Zarzycki, C. M., Reed, K. A., Bacmeister, J. T., Craig, A. P., Bates, S. C., & Rosenbloom, N. A. (2016). Impact of surface coupling grids on tropical cyclone extremes in high-resolution atmospheric simulations. Geoscientific Model Development, 9(2), 779-788.

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Smirnov, O., Zhang, M., Xiao, T., Orbell, J., Lobben, A., & Gordon, J. (2016). The relative importance of climate change and population growth for exposure to future extreme droughts. Climatic Change, 138(1-2), 41-53.

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Kalesse, H., Szyrmer, W., Kneifel, S., Kollias, P., & Luke, E. (2016). Fingerprints of a riming event on cloud radar Doppler spectra: observations and modeling. Atmospheric Chemistry and Physics, 16(5), 2997-3012.

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Bender, N. A., Crosbie, K., & Lynch, H. J. (2016). Patterns of tourism in the Antarctic Peninsula region: a 20-year analysis. Antarctic Science, 28(03), 194-203.

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Kim, H. M., Kim, D., Vitart, F., Toma, V. E., Kug, J. S., & Webster, P. J. (2016). MJO Propagation across the Maritime Continent in the ECMWF Ensemble Prediction System. Journal of Climate, 29(11), 3973-3988.

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Laskin, A., Gilles, M. K., Knopf, D. A., Wang, B., & China, S. (2016). Progress in the analysis of complex atmospheric particles. Annual Review of Analytical Chemistry, 9, 117-143.

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Bony, S., Stevens, B., Coppin, D., Becker, T., Reed, K. A., Voigt, A., & Medeiros, B. (2016). Thermodynamic control of anvil cloud amount. Proceedings of the National Academy of Sciences, 201601472.

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Chen, C. Y., Ward, D. M., Williams, J. J., & Fisher, N. S. (2016). Metal bioaccumulation by estuarine food webs in New England, USA. Journal of marine science and engineering, 4(2), 41.

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Gilbert, F., Hulth, S., Grossi, V., & Aller, R. C. (2016). Redox oscillation and benthic nitrogen mineralization within burrowed sediments: An experimental simulation at low frequency. Journal of Experimental Marine Biology and Ecology, 482, 75-84.

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Woodin, S. A., Volkenborn, N., Pilditch, C. A., Lohrer, A. M., Wethey, D. S., Hewitt, J. E., & Thrush, S. F. (2016). Same pattern, different mechanism: Locking onto the role of key species in seafloor ecosystem process. Scientific Reports, 6, 26678.

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Wang, W.-L., Armstrong, R. A., Cochran, J. K., and Heilbrun, C. (2016) 230Th and 234Th as coupled tracers of particle cycling in the ocean: A maximum likelihood approach., Deep Sea Research Part I: Oceanographic Research Papers, 111, 61-70., http://dx.doi.org/10.1016/j.dsr.2016.02.003.

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Warren, J. D., Leach, T. H., & Williamson, C. E. (2016). Measuring the distribution, abundance, and biovolume of zooplankton in an oligotrophic freshwater lake with a 710 kHz scientific echosounder. Limnology and Oceanography: Methods.

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Landman, N. H., Kruta, I., Denton, J. S., & Cochran, J. K. (2016). Getting unhooked: comment on the hypothesis that heteromorph ammonites were attached to kelp branches on the sea floor, as proposed by. Journal of Molluscan Studies, 82(2), 351-355

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Pershing, A.J., Alexander, M.A., Hernandez, C.M., Kerr, L.A., Le Bris, A., Mills, K.E., Nye, J.A., Record, N.R., Scannell, H.A., Scott, J.D. and Sherwood, G.D., 2016. Response to Comments on “Slow adaptation in the face of rapid warming leads to collapse of the Gulf of Maine cod fishery”. Science, 352(6284), pp.423-423.

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Shackell, N. L., Frank, K. T., Nye, J. A., & den Heyer, C. E. (2016). A transboundary dilemma: dichotomous designations of Atlantic halibut status in the Northwest Atlantic. ICES Journal of Marine Science: Journal du Conseil, fsw042.

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Gobler, C. J., & Baumann, H. (2016). Hypoxia and acidification in ocean ecosystems: coupled dynamics and effects on marine life. Biology Letters, 12(5), 20150976.

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Young, C. S., & Gobler, C. J. (2016). Ocean Acidification Accelerates the Growth of Two Bloom-Forming Macroalgae. PloS one, 11(5), e0155152.

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Druffel, E. R. M., Beaupré, S. R., & Ziolkowski, L. A. (2016). Radiocarbon in the Oceans. In Radiocarbon and Climate Change (pp. 139-166). Springer International Publishing.

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Chapperon, C., Volkenborn, N., Clavier, J., Séité, S., Seabra, R., & Lima, F. P. (2016). Exposure to solar radiation drives organismal vulnerability to climate: Evidence from an intertidal limpet. Journal of Thermal Biology, 57, 92-100.

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Trumbore, S. E., Xu, X., Santos, G. M., Czimczik, C. I., Beaupré, S. R., Pack, M. A., … & Ziolkowski, L. (2016). Preparation for radiocarbon analysis. In Radiocarbon and Climate Change (pp. 279-315). Springer International Publishing.

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Wehrmann, L. M., Ockert, C., Mix, A. C., Gussone, N., Teichert, B. M. A., & Meister, P. (2016). Repeated occurrences of methanogenic zones, diagenetic dolomite formation and linked silicate alteration in southern Bering Sea sediments (Bowers Ridge, IODP Exp. 323 Site U1341). Deep Sea Research Part II: Topical Studies in Oceanography, 125, 117-132.

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Moore, M.J, McElroy, A.E. Geoghegan, P., Siskey, M.R. and Pembroke, A.E. 2016. Founder Monitoring Report: 2015 Results. Boston:Massachusetts Water Resources Authority. Report 2016-05. 40 pp.

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Pandey, R., Usui, K., Livingstone, R. A., Fischer, S. A., Pfaendtner, J., Backus, E. H., Knopf, D.A. … & Scheel, J. F. (2016). Ice-nucleating bacteria control the order and dynamics of interfacial water. Science Advances, 2(4), e1501630.

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Chen, J., Liu, Y., Zhang, M., & Peng, Y. (2016). New Understanding and Quantification of the Regime Dependence of Aerosol‐Cloud Interaction for Studying Aerosol Indirect Effects. Geophysical Research Letters.

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Martinez, C. M., Rohlf, F. J., & Frisk, M. G. (2016). Sexual dimorphism in sister species of Leucoraja skate and its relationship to reproductive strategy and life history. Evolution & Development.

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Cahill, A. E., & Levinton, J. S. (2016). Genetic differentiation and reduced genetic diversity at the northern range edge of two species with different dispersal modes. Molecular ecology, 25(2), 515-526.

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Soulet, G., Skinner, L. C., Beaupré, S. R., & Galy, V. (2016). A Note on Reporting of Reservoir 14 C Disequilibria and Age Offsets. Radiocarbon, 58(1), 205-211.

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Baines, S. B., Chen, X., Vogt, S., Fisher, N. S., Twining, B. S., & Landry, M. R. (2016). Microplankton trace element contents: implications for mineral limitation of mesozooplankton in an HNLC area. Journal of Plankton Research, fbv109.

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Trammell, J. H., Jiang, X., Li, L., Kao, A., Zhang, G. J., Chang, E. K., & Yung, Y. (2016). Temporal and Spatial Variability of Precipitation from Observations and Models*. Journal of Climate, 29(7), 2543-2555.

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Bluestein, H. B., French, M. M., Snyder, J. C., & Houser, J. B. (2016). Doppler Radar Observations of Anticyclonic Tornadoes in Cyclonically Rotating, Right-Moving Supercells. Monthly Weather Review, 144(4), 1591-1616.

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Fisher, S. C., Phillips, P. J., Brownawell, B. J., & Browne, J. P. (2016). Comparison of wastewater-associated contaminants in the bed sediment of Hempstead Bay, New York, before and after Hurricane Sandy. Marine Pollution Bulletin.

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Levy, H., Clucas, G.V., Rogers, A.D., Leaché, A.D., Ciborowski, K.L., Polito, M.J., Lynch, H.J., Dunn, M.J. and Hart, T., (2016). Population structure and phylogeography of the Gentoo Penguin (Pygoscelis papua) across the Scotia Arc. Ecology and evolution.

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Griffith, A. W., & Gobler, C. J. (2016). Temperature controls the toxicity of the ichthyotoxic dinoflagellate Cochlodinium polykrikoides. MEPS, 545, 63-76.

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Reed, K. A., & Medeiros, B. (2016). A reduced complexity framework to bridge the gap between AGCMs and cloud‐resolving models. Geophysical Research Letters.

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Pascal, L., Maire, O., Volkenborn, N., Lecroart, P., Bichon, S., de Montaudouin, X., … & Deflandre, B. (2016). Influence of the mud shrimp Upogebia pusilla (Decapoda: Gebiidea) on solute and porewater exchanges in an intertidal seagrass (Zostera noltei) meadow of Arcachon Bay: An experimental assessment. Journal of Experimental Marine Biology and Ecology, 477, 69-79.

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Allam, B., & Espinosa, E. P. (2016). Bivalve immunity and response to infections: Are we looking at the right place?. Fish & Shellfish Immunology.

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Moniruzzaman, M., Gann, E. R., LeCleir, G. R., Kang, Y., Gobler, C. J., & Wilhelm, S. W. (2016). Diversity and dynamics of algal Megaviridae members during a harmful brown tide caused by the pelagophyte, Aureococcus anophagefferens. FEMS Microbiology Ecology, fiw058.

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Chapperon, C., Volkenborn, N., Clavier, J., Séité, S., Seabra, R., & Lima, F. P. (2016). Exposure to solar radiation drives organismal vulnerability to climate: Evidence from an intertidal limpet. Journal of Thermal Biology, 57, 92-100.

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Witharana, C., LaRue, M. A., & Lynch, H. J. (2016). Benchmarking of data fusion algorithms in support of earth observation based Antarctic wildlife monitoring. ISPRS Journal of Photogrammetry and Remote Sensing, 113, 124-143.

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Karimi, R., Vacchi-Suzzi, C., & Meliker, J. R. (2016). Mercury exposure and a shift toward oxidative stress in avid seafood consumers. Environmental research, 146, 100-107.

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Chang, E. K., Ma, C. G., Zheng, C., & Yau, A. M. (2016). Observed and projected decrease in Northern Hemisphere extratropical cyclone activity in summer and its impacts on maximum temperature. Geophysical Research Letters, 43(5), 2200-2208.

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Wang, K., del Castillo, C., Corre, E., Espinosa, E. P., & Allam, B. (2016). Clam focal and systemic immune responses to QPX infection revealed by RNA-seq technology. BMC genomics, 17(1), 1.

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Choi, J., Son, S. W., Ham, Y. G., Lee, J. Y., & Kim, H. M. (2016). Seasonal-to-interannual prediction skills of near-surface air temperature in the CMIP5 decadal hindcast experiments. Journal of Climate, (2016).

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Giner, J. L., Ceballos, H., Tang, Y. Z., & Gobler, C. J. (2016). Sterols and Fatty Acids of the Harmful Dinoflagellate Cochlodinium polykrikoides. Chemistry & biodiversity, 13(2), 249-252.

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O’Leary, S. J., Martinez, C. M., Baumann, H., Abercrombie, D. L., Poulakis, G. R., Murray, C. H., … & Chapman, D. D. (2016). Population genetics and geometric morphometrics of the key silverside, Menidia conchorum, a marine fish in a highly-fragmented, inland habitat. Bulletin of Marine Science.

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Espinosa, E. P., Cerrato, R. M., Wikfors, G. H., & Allam, B. (2016). Modeling food choice in the two suspension-feeding bivalves, Crassostrea virginica and Mytilus edulis. Marine Biology, 163(2), 1-13.

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Ladino, L.A., Yakobi-Hancock, J.D., Kilthau, W.P., Mason, R.H., Si, M., Li, J., Miller, L.A., Schiller, C.L., Huffman, J.A., Aller, J.Y. and Knopf, D.A., 2016. Addressing the ice nucleating abilities of marine aerosol: A combination of deposition mode laboratory and field measurements. Atmospheric Environment.

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Volkenborn N., Woodin S.A., Wethey D.S., Polerecky L. (2016) Bioirrigation in marine sediments. Reference Module in Earth Systems and Environmental Sciences. DOI: 10.1016/B978-0-12-409548-9.09525-7

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Cahill, A. E., & Levinton, J. S. (2016). Genetic differentiation and reduced genetic diversity at the northern range edge of two species with different dispersal modes. Molecular ecology, 25(2), 515-526.

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Pinaud, S., Portela, J., Duval, D., Nowacki, F.C., Olive, M.A., Allienne, J.F., Galinier, R., Dheilly, N.M., Kieffer-Jaquinod, S., Mitta, G. and Théron, A., 2016. A Shift from Cellular to Humoral Responses Contributes to Innate Immune Memory in the Vector Snail Biomphalaria glabrata. PLoS Pathog, 12(1), p.e1005361.

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Hattenrath-Lehmann, T. K., Zhen, Y., Wallace, R. B., Tang, Y. Z., & Gobler, C. J. (2016). Mapping the distribution of cysts from the toxic dinoflagellate, Cochlodinium polykrikoides, in bloom-prone estuaries using a novel fluorescence in situ hybridization assay. Applied and environmental microbiology, 82 (4):1114-1125; 10.1128/AEM.03457-15 FEB 2016

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Liu, P., Zhang, Q., Zhang, C., Zhu, Y., Khairoutdinov, M., Kim, H. M., … & Zhang, M. (2016). A Revised Real-Time Multivariate MJO Index. Monthly Weather Review, 144 (2):627-642; 10.1175/MWR-D-15-0237.1 FEB 2016

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Li, Y., & Zhang, M. (2016). Cumulus over the Tibetan Plateau in the Summer Based on CloudSat-CALIPSO Data. Journal of Climate, 29 (3):1219-1230; 10.1175/JCLI-D-15-0492.1 FEB 2016.

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Chapman, D. D., Feldheim, K.A., Papastamatiou, Y., Hueter, R.H. There and Back Again: A review of residency and return migrations in sharks, with implications for population structure and management. Annual Reviews in Marine Science (Available online in advance of publication).

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Ashe, J., Feldheim, K.A., Fields, A., Brooks, E.J., Skomal, G., Gruber, S.H., Chapman, D. D. (In Press). Local population structure and context-dependent isolation by distance in a large coastal shark. Marine Ecology Progress Series.

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Kessel, S.T., Chapman, D. D., Franks, B. R., Gedamke, T., Gruber, S. H., Newman, M.J., White, E. R., Perkins, R. G. (In Press). Predictable temperature regulated residency, movement and migration in a large, highly-mobile marine predator. Marine Ecology Progress Series.

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Alpert, P. A. & Knopf, D. A. (2016). Analysis of isothermal and cooling-rate-dependent immersion freezing by a unifying stochastic ice nucleation model, Atmospheric Chemistry and Physics 16 (4), 2083-2107

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Stubler, A. D., A. K. Stevens and B. J. Peterson. 2016. Using community-wide recruitment and succession patterns to assess sediment stress on Jamaican coral reefs. Journal of Experimental Marine Biology and Ecology 474: 29-38.

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Giner, J. L., Ceballos, H., Tang, Y. Z., & Gobler, C. J. (2016). Sterols and Fatty Acids of the Harmful Dinoflagellate Cochlodinium polykrikoides. Chemistry & Biodiversity, 13(2), 249-252.

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Espinosa, E. P., Koller, A., & Allam, B. (2016). Proteomic characterization of mucosal secretions in the eastern oyster, Crassostrea virginica. Journal of proteomics, 132, 63-76. DOI information: 10.1016/j.jprot.2015.11.018

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Baines, S.B., X. Chen, S. Vogt, N.S. Fisher, B.S. Twining, and M.R. Landry. In press. Elemental content of single-celled plankton in the Costa Rica Upwelling Dome and mineral limitation of mesozooplankton. Journal of Plankton Research

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Baines, S.B., X. Chen, B.S. Twining, N.S. Fisher, and M.R. Landry. In press. Factors affecting Fe and Zn contents of mesozooplankton from the Costa Rica Dome. Journal of Plankton Research

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Martinez, C.M., F.J. Rohlf and M.G. Frisk (In Press). Sexual dimorphism in sister species of Leucoraja skate and its relationship to reproductive strategy and life history. Evolution & Development.

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Li, H., & Colle, B. A. 2015: Future Changes in Convective Storm Days over the Northeastern United States Using Linear Discriminant Analysis Applied to CMIP5 Predictions. J. Climate. doi: http://dx.doi.org/10.1175/JCLI-D-14-00831.1.

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Colle, B. A., Sienkiewicz, M. J., Archer, C., Veron, D., Veron, F., Kempton, W., & Mak, J. E. (2016). Improving the mapping and prediction of offshore wind resources (IMPOWR): Experimental overview and first results. Bulletin of the American Meteorological Society, 97(8), 1377-1390.

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Pascal, L., Maire, O., Volkenborn, N., Lecroart, P., Bichon, S., de Montaudouin, X., … & Deflandre, B. (2016). Influence of the mud shrimp Upogebia pusilla (Decapoda: Gebiidea) on solute and porewater exchanges in an intertidal seagrass (Zostera noltei) meadow of Arcachon Bay: An experimental assessment. Journal of Experimental Marine Biology and Ecology, 477, 69-79.

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Dunton, K. J., Jordaan, A., Secor, D. H., Martinez, C. M., Kehler, T., Hattala, K. A., … & Frisk, M. G. (2016). Age and Growth of Atlantic Sturgeon in the New York Bight. North American Journal of Fisheries Management, 36(1), 62-73.

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Trammell, J. H., Jiang, X., Li, L., Kao, A., Zhang, G. J., Chang, E. K., & Yung, Y. (2016). Temporal and Spatial Variability of Precipitation from Observation and Model. Journal of Climate, (2016).

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Espinosa, E. P., Cerrato, R. M., Wikfors, G. H., & Allam, B. (2016). Modeling food choice in the two suspension-feeding bivalves, Crassostrea virginica and Mytilus edulis. Marine Biology, 163(2), 1-13.

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Martinez, C. M., Rohlf, F. J., & Frisk, M. G. (2016). Re‐evaluation of batoid pectoral morphology reveals novel patterns of diversity among major lineages. Journal of morphology, 277(4), 482-493.

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Erickson, M. J., Charney, J. J., & Colle, B. A. (2015). Development of a Fire Weather Index Using Meteorological Observations within the Northeast United States. Journal of Applied Meteorology and Climatology, (2015).

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Cuesta, F., Muriel, P., Llambi, L.D., Halloy, S., Aguirre, N., Beck, S., Carilla, J., Menses, R.I., Cuello, S., Grau, A., Gamez, L., Irazabel, J., Jacome, J., Jaramillo, R., Ramirez, L., Samaniego, N., Suarez-Duque, D., Thompson, N., Tupuachi, A., Viñas, P., Yager, K., Becerra, M., Pauli, H., Gosling, W. (2016) Latitudinal and altitudinal patterns of plant community diversity on mountain summits across the tropical Andes. Ecography

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Wang, X. H., Wang, D. P., Sun, Z., He, Z., Liu, H., Guan, W., … & Bao, X. (2016). International scientists discuss impact on China’s estuarine and coastal environment by intensive anthropogenic activities–The 2nd workshop on sediment dynamics of muddy coasts and estuaries: Physics, biology and their interactions, Zhoushan, China, 23–26 October, 2015. Estuarine, Coastal and Shelf Science, 168, ii-iii.

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Espinosa, E. P., Koller, A., & Allam, B. (2016). Proteomic characterization of mucosal secretions in the eastern oyster, Crassostrea virginica. Journal of proteomics, 132, 63-76.

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Wang, K., Espinosa, E. P., Tanguy, A., & Allam, B. (2016). Alterations of the immune transcriptome in resistant and susceptible hard clams (Mercenaria mercenaria) in response to Quahog Parasite Unknown (QPX) and temperature. Fish & shellfish immunology, 49, 163-176.

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Stubler, A. D., Stevens, A. K., & Peterson, B. J. (2016). Using community-wide recruitment and succession patterns to assess sediment stress on Jamaican coral reefs. Journal of Experimental Marine Biology and Ecology,474, 29-38.

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Martinez, C. M., Rohlf, F. J. and Frisk, M. G. (2016), Sexual dimorphism in sister species of Leucoraja skate and its relationship to reproductive strategy and life history. Evolution & Development. doi: 10.1111/ede.12175

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Pochron, S. (2016) Monkeys In The Garden Irven DeVore and the Revolution in the Science of Social Behavior. Smashwords.

Pochron, S. (2016) Monkeys In The Garden Irven DeVore and the Revolution in the Science of Social Behavior. Smashwords.

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Rider, Tara. The Once and Future Queen: The Imagining and Reimagining of Ireland. 2016. New Trails and Beaten Paths in Celtic Studies.

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Tang, S., Zhang, M., & Xie, S. (2016). An ensemble constrained variational analysis of atmospheric forcing data and its application to evaluate clouds in CAM5. Journal of Geophysical Research: Atmospheres, 121(1), 33-48.

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Godelitsas, A., Price, R. E., Pichler, T., Amend, J., Gamaletsos, P., & Göttlicher, J. (2015). Amorphous As-sulfide precipitates from the shallow-water hydrothermal vents off Milos Island (Greece). Marine Chemistry, 177, 687-696.

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School of Marine and Atmospheric Sciences, SoMAS, at Stony Brook University, Stony Brook, NY 11794-5000, USA
Phone: 631-632-8700
somas@stonybrook.edu