Monthly Archives: February 2016

Biochemistry and Cell Biology Master of Science Graduate Program

The Biochemistry and Cell Biology MS program hit its fifth year mark in 2014. Our mission is to provide students with a fundamental theoretical and practical understanding of biochemistry and cell biology, that will prepare them for opportunities in real life sciences.  We are proud of our students, faculty, and alumni for their efforts in making our BCB MS program a success.  This year, which reflects our overall five-year average, 90% of our graduates completed their MS in three semesters and were accepted in Ph.D., MD or DDS programs.  This cohort of ten students represents our largest graduating class yet. Half of the these students will continue doctoral research in Ph.D. programs at Cornell, Stony Brook, and Bloomington.  We also congratulate three of our 2014 graduates who are off to Medical School.

This year’s incoming class of nine promises to be equally successful.  These students are currently performing research in areas spanning Biochemistry, Cell Biology, Biochemistry, Genetics, and Neurobiology, in labs at Stony Brook, Brookhaven, and Cold Spring Harbor. The enthusiasm of our faculty to recruit BCB MS students into their labs is another testament to the quality of this program.

BCB MS incoming class of 2014 –  (left to right) Anna Dowling, Brian Benz, Ronald Chavez, Arnav Choksi, Safa Siddiqui, Yu-Jung Tseng, Leo Williams, Brad Greenstein, and Sam Chiappone

Li, Huilin

In the past two years, we continued our NIH-funded research on cryo-EM structural biology. In Feb 2014, Huilin was invited to present a talk at a special cryo-EM symposium in Berkeley, California, in honor of his postdoctoral mentor Kenneth Downing, one of the pioneers in the field. In the same trip to the west coast, he gave a platform presentation on DNA replication at the 58th Annual Biophysics Society Meeting in San Francisco. In September 2014, Huilin co-chaired with Yifan Cheng at UCSF an international cryo-EM symposium and workshop in Shanghai, and witnessed very impressive advance of cryo-EM in particular and structural biology in general in China. In September 2015, Huilin presented a platform talk at the biannual CSHL meeting on Eukaryotic DNA Replication & Genome Maintenance. In the summer this year, Huilin is invited to present at the 3DEM Gordon Research Conference to be held first time ever in Asia (Hong Kong). He is also invited to present at another cryo-EM symposium in Beijing in the summer. Over the past year or so, he also gave departmental seminars at Ohio State University (Aug 2014), University of Colorado Denver (Jan 2015), Purdue University (Feb 2015), and University of Georgia Athens (Feb 2016).

Several people joined our lab recently. Ruda Santos is a graduate student in the BSB program. He is funded by a Brazil government scholarship. Ping Zhu joined us this year as a postdoctoral fellow, funded by the Chinese Scholarship Council. In September 2015, Kuan Hu, a fourth year graduate student in the BSB program, won Dr. Mow Lin Scholarship at BNL, for his outstanding thesis work on a novel Mycobacterium tuberculosis proteasome activator (Proc Nat Acad Sci 2016 in print). Additional lab members include undergraduate student Olivia Jie Hu, Ph.D. students Samema Sarowar and Zuanning Yuan, postdoctoral scholars Lin Bai and Hongjun Yu, and research scientists Hao-Chi Hsu and Jingchuan Sun.

Wollmuth, Lonnie

Research in the Wollmuth lab continues to address molecular and biophysical mechanisms underlying fast synaptic transmission in the nervous system, focusing specifically on those synapses that use glutamate as a neurotransmitter.  The big news over the past year was the starting of a new RO1 entitled ‘Gating and permeation in ionotropic glutamate receptors’.  Johansen Amin and Kelvin Chan, MSTP students, joined the lab.  Undergraduates Matthew Alsaloum (Biochemistry) and Joel Thomas (Pharmacology) completed honors thesis in the Spring, 2015.  Matthew is presently in the M.D./Ph.D. program at Yale medical school.  Aaron Gochman, a new undergraduate in the lab, was awarded a URECA summer fellowship for the summer of 2015.  Graduate students/fellows in the lab presented posters at the Society for Neuroscience (Quan Gan, Catherine Salussolia) and Biophysical Society (Johansen Amin) meetings.  I gave invited seminars at the Hartman Center Symposium on Parkinson’s Research at Stony Brook, in the Dept. of Biochemistry and Molecular Biophysics at Columbia University, and at the Ion Channel meeting at the Telluride Research Center in Telluride, Colorado.

London, Erwin

Erwin presented seminars in 2015 at the Medical College of Wisconsin, Marquette University, Dept. of Chemistry, and a talk at the workshop on “Sphingolipids in Infection and Beyond” in Würzburg, Germany.   He is Principal Investigator on a new NIH grant “Defining Principles and Functions of Membrane Organization Using Asymmetric Vesicles” that started in 2015.  A 2015 article with co-author former Ph.D. student Qingqing Lin “Ordered Raft Domains Induced by Outer Leaflet Sphingomyelin in Cholesterol-Rich Asymmetric Vesicles” Biophys. J., 108, 2212-2022 was discussed as a “New and Notable” article in the Biophysical Journal (May 5, 2015).  Erwin continues to serve as the Director of the Biochemistry and Structural Biology Graduate Program, as a member of the Editorial Advisory Board for the journal Biochemistry. He also continues to be a member of the Postdoctoral Fellowship Award Committee for the Life Sciences Research Foundation. Lab members at the end of 2015 included postdoctoral scientist Guangtao Li, Ph.D. students JiHyun Kim, James LeBarron, Johnna St. Clair, Zhen Huang and Qing Wang, and undergraduates Sade Seidu and Silvia Salamone.

Neiman, Aaron

Aaron Neiman spent part of the academic year on sabbatical at the Pasteur Institute in Paris.  There he worked on expanding the scope of his laboratory’s study of cell wall development in fungi by learning to work with the pathogenic fungus Aspergillus fumigatus.  Aaron presented his lab’s work in seminars at the Institute Jacques Monod, the University of Groningen, and the University of Toronto.  He also spoke at international meetings on the Fungal Cell Wall and on Neuroacanthocytosis.  In addition to the studies of cell wall assembly, current projects in the lab include the regulation of RNA localization in controlling the developmental timing of gene expression and how defects in a membrane contact site protein leads to neurodegenerative disease in humans.  The people performing these studies are a research scientist, Jae-Sook Park, three graduate students, Reuben Hoffman, Liang Jin, and Sai Zhou, a Master’s student, Patrick Singer, and the lab technician, Kai Zhang.

Deutsch, Dale

Professor Dale Deutsch received the International Cannabinoid Research Society (ICRS) Lifetime Achievement Award at a Symposium held in Nova Scotia this summer.The Career Award is given to a senior individual who has dedicated his or her career to furthering cannabinoid and endocannabinoid research. A record of enduring high-impact publications, awards, and committee membership exemplify such dedication. Awardees are expected to have had broad impact on more than one aspect of the field. This award is given at the annual ICRS Symposium on the Cannabinoids

Dale has been active in the ICRS since its inception in 1992 and has made numerous contributions to the field of endocannabinoid biology. His laboratory identified the enzyme that breaks down the body’s own marijuana-like substance called anandamide, and characterized the first inhibitors of this enzyme called FAAH. A new generation of these inhibitors are now being studied in human clinical trials. He established that anandamide uptake into cells is driven by FAAH activity and demonstrated with collaborators that the enzyme called NAPE-PLD was responsible for anandamide biosynthesis. His laboratory recently elucidated mechanisms by which intracellular transporters carry anandamide to FAAH for catabolism and also showed that these transporters, called fatty acid binding proteins, are carriers for THC and CBD, components of marijuana. Currently he and collaborators are designing drugs that target the transporter and raise anandamide levels.

In addition to his scientific accomplishments, Dale served as the International Cannabinoid Research Society newsletter editor for approximately 10 years and has also served as the President of this society.

Dale is in the Department of Biochemistry and Cell Biology. He was born in the USA and received his B.A. from the University of Buffalo in Chemistry and his PhD from Purdue University in Biochemistry specializing in enzymology. His postdoctoral research took him from the University of Colorado, to the University of Chicago and finally to Stony Brook University. He joined the Department of Pathology at Stony Brook in 1982 and joined Biochemistry and Cell Biology in 1988 where he has continued to direct the major undergraduate biochemistry teaching laboratory. He was a visiting professor at Tokushima University in Japan and at Scripps in La Jolla, CA and is currently on sabbatical in San Francisco. He has been the recipient of research grants since the early 1980s and recently was the PI on a 5 year 3.5 million dollar NIH grant to study anandamide transport inhibitors.

 

 

Citovsky, Vitaly

Vitaly Citovsky received the F1000 Outstanding Faculty Member of the Year Award. Vitaly continues to be funded by NIH/NIGMS, NSF, USDA/NIFA, US-Israel Binational Agricultural Research and Development Fund (BARD), and US-Israel Binational Science Foundation (BSF). Vitaly joined the Editorial Board of PLOS ONE and he continues to serve on Editorial Boards of Scientific Reports (Nature Publishing Group), Biochemical and Biophysical Research Communications (BBRC), F1000 Research, Virology, Plant Physiology, Frontiers in Plant-Microbe Interactions (Nature Publishing Group), Plant Signaling & Behavior, Communicative and Integrative Biology, and Gene Regulation and Systems Biology, and is a member of the Cell Biology section of Faculty 1000 Biology. Vitaly participated in the NSF Strategic Workshop On Plant Transformation & Genome Editing. Vitaly served on the Science and Technology Steering Committee for the BNL Board of Directors, the Graduate Council Fellowships and Awards Committee, the Departmental Awards Committee, and the Undergraduate Biology Curriculum Committee. Vitaly also has accepted a US-Israel Binational Agricultural Research and Development Fund (BARD) Postdoctoral Fellow, Dr. H. Hak, for training.

Alumni Updates

  • Rear Admiral Steven K. Galson ’78  Rear Admiral Steven K. Galson ’78, MD, MPH, served as the Acting Surgeon General of the United States from 2007 to 2009.  He fondly recalls his undergraduate student years at Stony Brook University. “My time at Stony Brook played a key role in my professional growth,” he said. “The dedication of the faculty and their interest in teaching undergraduates made a huge difference in my ability to grow and learn.”  While acting as Surgeon General, Dr. Galson’s job was to communicate the best science, evidence, and data to Americans in order for them to make healthy choices that impact their health, safety and security.
  • Charles J. Ruotolo, ’90, is was awarded the designation of “Top Orthopedist on LI” by the Bethpage Best on LI and the Long Island Press.  As the chairman of the Department of Orthopedics at Nassau University Medical Center, Dr. Ruotolo is helping to guide the hospital in its revival as a leading center for orthopedic surgery.
Stay in touch!!!

We are always excited to hear what careers our alumni have gone on to.

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EMAIL: Pamela.Wolfskill@stonybrook.edu in the Department of Biochemistry and Cell Biology with your news or go to http://mobile.cc.stonybrook.edu/sb/alumni/form/send-us-your-news/

Hollingsworth, Nancy

Since the last newsletter, Professor Nancy Hollingsworth has presented seminars at Amherst College in Massachusetts, in the SBU/CSHL/BNL Evolutionary Functional Genomics Seminar Series, and at the Donnelly Center at the University of Toronto. She was an invited speaker for a scientific symposium held in celebration of Doug Koshland’s 60th birthday at UC Berkeley, and attended the 30th year Pew Scholars Reunion Meeting in Grand Cayman.  Nancy continues to serve as a regular member on the Cell Lineage and Differentiation study section for the March of Dimes and has been an ad hoc member for two NIH MIRA study sections, as well as a member of a National Cancer Institute site visit panel to the Laboratory of Biochemistry and Molecular Biology.  In December, Nancy completed an eight-year term as Associate Editor for GENETICS.  Nancy was received the SUNY Chancellor’s Award for Excellence in Teaching and was promoted to the rank of SUNY Distinguished Teaching Professor.  There have been many happy outcomes for former members of Nancy’s lab.  Tracy Callender, who was both a graduate student and IRACDA post-doctoral scientist in the Hollingsworth lab, started a position in Fall 2015 as an Assistant Professor at the C.W Post campus at Long Island University.  Nancy’s first graduate student, Hengyao Niu, has started his own lab as an Assistant Professor at Indiana University.  Two former undergraduates, David Chen and Saif Laljee, were both SBU valedictorians and have started medical school at Mt. Sinai and NYU, respectively.  Matt Murrary completed his Master’s in Biochemistry and Cell Biology.  Nancy’s lab currently consists of Evelyn Prugar (PhD student), Ray Suhandynata (PhD student), Xiangyu Chen (Research scientist), Lihong Wan (Research scientist), Dimitri Joseph (Master’s student) and Cameron Burnett (Research Technician).

 

 

Proteomics Facility

The Proteomics Center analyzes protein/peptide/small molecule samples with the help of mass spectrometry. The Proteomics technical staff measure intact masses of proteins/peptides/small molecules, identify peptides based on their sequence, and discover post-translational modifications. Comparisons of protein expressions between different samples are conducted. The center has four different mass spectrometers: a Matrix-assisted laser desorption/ionization time-of-flight mass spectrometer; a triple quadrupole mass spectrometer; a linear ion-trap mass spectrometer; and a high-resolution, high mass accuracy hybrid mass spectrometer with four different activation methods (Thermo LTQ Orbitrap XL with ETD). In addition, equipment for running 2D gel electrophoresis and analysis are also present. For additional information, services and fees please link to: http://www.osa.sunysb.edu/Proteomics/