REFEREED ARTICLES (as of Jun 22, 2017: 36 total, with 2661 citations; h-index=20, i10-index=25)(5 other manuscripts currently in review)

* indicates student co-authors; ^ indicates invited reviews

Gleason, Frank H., Osu Lilje, Cecile Dang, Sabrina Geraci-Yee* and Jackie L. Collier. 2017. Possible impacts of zoosporic parasites in diseases of commercially important marine mollusc species: part I. Perkinsozoa. Botanica Marina 60(4):401-408. DOI: https://doi.org/10.1515/bot-2016-0132

Jackie L. Collier, Sabrina Geraci-Yee*, Osu Lilje, and Frank H. Gleason. 2017. Possible impacts of zoosporic parasites in diseases of commercially important marine mollusc species: part II. Labyrinthulomycota. Botanica Marina 60(4):409-417. DOI: https://doi.org/10.1515/bot-2016-0133

Ohnemus, D. C., S. Rauschenberg, J. W. Krause, M. A. Brzezinski, J. L. Collier, S. Geraci-Yee*, S. B. Baines, B. S. Twining. 2016. Silicon content of individual cells of Synechococcus from the North Atlantic Ocean. Marine Chemistry 187:16-24.  DOI: http://dx.doi.org/10.1016/j.marchem.2016.10.003

Brzezinski, M. A., J. W. Krause, S. B. Baines, J. L. Collier, D. C. Ohnemus, and B. S. Twining. 2017. Patterns and regulation of silicon accumulation in Synechococcus spp. Journal of Phycology 53(4):746-761  DOI: 10.1111/jpy.12545

Krause, J. W., M.A. Brzezinski, S.B. Baines, J. L. Collier, B. S. Twining, D. C. Ohnemus. 2017 Picoplankton contribution to biogenic silica stocks and production rates in the Sargasso Sea. Global Biogeochemical Cycles 31(5):762-774.  DOI: 10.1002/2017GB005619

Liu, Q*., J.L. Collier, and B. Allam. 2017. Seasonality of QPX disease in the Raritan Bay (NY) wild hard clam (Mercenaria mercenaria) population. Aquaculture Research 48(3): 1269-1278. DOI: 10.1111/are.12969

Chao Ye, Weihua Qiao, Xiaobin Yu, Xiaojun Ji, He Huang, J. L. Collier, Liming Liu. 2015. Reconstruction and analysis of the genome-scale metabolic model of schizochytrium limacinum SR21 for docosahexaenoic acid production. BMC Genomics 16 :799 (11pp). DOI 10.1186/s12864-015-2042-y

Koch, F.*, A. Burson-O’Byrne*, Y. Z. Tang, J. L. Collier, N. S. Fisher, S. Sañudo-Wilhelmy and C. J. Gobler. 2014. Alteration of plankton communities and biogeochemical cycles by harmful Cochlodinium polykrikoides (Dinophyceae) blooms. Harmful Algae 33(March):41-54. doi: http://dx.doi.org/10.1016/j.hal.2014.01.003

P. J. Keeling, and 80 others in alphabetical order F. Burki, H. M. Wilcox, B. Allam, E. E. Allen, L. A. Amaral-Zettler, E. V. Armbrust, J. M. Archibald, A. K. Bharti, C. J. Bell, B. Beszteri, K. D. Bidle, C. T. Cameron, L. Campbell, D. A. Caron, R. A. Cattolico, J. L. Collier, K. Coyne, S. K. Davy, P. Deschamps, S. T. Dyhrman, B. Edvardsen, R. D. Gates, C. J. Gobler, S. J. Greenwood, S. M. Guida, J. L. Jacobi, K. S. Jakobsen, E. R. James, B. Jenkins, U. John, M. D. Johnson, A. R. Juhl, A. Kamp, L. A. Katz, R. Kiene, A. Kudryavtsev, B. S. Leander, S. Lin, C. Lovejoy, D. Lynn, A. Marchetti, G. McManus, A. M. Nedelcu, S. Menden-Deuer, C. Miceli, T. Mock, M. Montresor, M. A. Moran, S. Murray, G. Nadathur, S. Nagai, P. B. Ngam, B. Palenik, J. Pawlowski, G. Petroni, G. Piganeau, M. C. Posewitz, K. Rengefors, G. Romano, M. E. Rumpho, T. Rynearson, K. B. Schilling, D. C. Schroeder,A. G. B. Simpson, C. H. Slamovits, D. R. Smith, G. J. Smith, S. R. Smith, H. M. Sosik, P. Stief, E. Theriot, S. N. Twary, P. E. Umale, D. Vaulot, B. Wawrik, G. L. Wheeler, W. H. Wilson, Y. Xu, A. Zingone, A. Z. Worden. 2014. The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans through Transcriptome Sequencing. PLoS Biology 12(6):e1001889. DOI: 10.1371/journal.pbio.1001889

Collier J.L., S.P. Fitzgerald*, L.A. Hice, M.G. Frisk, A.E. McElroy. 2014. A New PCR-Based Method Shows That Blue Crabs (Callinectes sapidus (Rathbun)) Consume Winter Flounder (Pseudopleuronectes americanus (Walbaum)). PLoS ONE 9(1): e85101. doi:10.1371/journal.pone.0085101

Collier J.L., R. Lovindeer*, Y. Xi*, J.C. Radway, and R. A. Armstrong. 2012. Differences in growth and physiology of marine Synechococcus (Cyanoacteria) on nitrate versus ammonium are not determined solely by nitrogen source redox state. Journal of Phycology 48(1): 106-116. (doi: 10.1111/j.1529-8817.2011.01100.x)

Gobler, C.J., D.L. Berry, S.T. Dyhrman, S.W. Wilhelm, A. Salamov, A.V. Lobanov, Y. Zhang, J.L. Collier, L.L. Wurch, A.B. Kustka, B.D. Dill, M. Shah, N.C. VerBerkmoes, A. Kuo, A. Terry, J. Pangilinan, E.A. Lindquist, S. Lucas, I.T. Paulsen, T.K. Hattenrath-Lehmann*, S.C. Talmage*, E.A. Walker*, F. Koch*, A.M. Burson*, M.A. Marcoval, Y.Z. Tang, G.R. LeCleir, K.J. Coyne, G.M. Berg, E.M. Bertrand, M.A. Saito, V.N. Gladyshev, I.V. Grigoriev. 2011. Niche of harmful alga Aureococcus anophagefferens revealed through ecogenomics. Proceedings of the National Academy of Sciences of the United States of America 108(11): 4352-4357. (doi: 10.1073/pnas.1016106108)

Dahl, S.F.*, M. Perrigault*, Q.Q. Liu*, J.L. Collier, D.A. Barnes, B. Allam B. 2011. Effects of temperature on hard clam (Mercenaria mercenaria) immunity and QPX (Quahog Parasite Unknown) disease development: I. Dynamics of QPX disease. Journal of Invertebrate Pathology 106(2): 314-321. (doi: 10.1016/j.jip.2010.11.005)

Solomon, C.M., J.L. Collier, G.M. Berg, P.M. Glibert. 2010. Role of urea in microbial metabolism in aquatic systems: a biochemical and molecular review. Aquatic Microbial Ecology 59:67-88. (doi: 10.3354/ame01390)

Collado Mercado, E.*, J.C. Radway, and J.L. Collier. 2010. Novel uncultivated labyrinthulomycetes revealed by 18S rDNA sequences from seawater and sediment samples. Aquatic Microbial Ecology 58:215-228. (doi: 10.3354/ame01361)

Collier J.L., Baker, K.M.*, and S.L. Bell*. 2009. Diversity of urea-degrading microorganisms in open-ocean and estuarine planktonic communities. Environmental Microbiology 11(12):3118-3131. (doi: 10.1111/j.1462-2920.2009.02016.x)

Liu, Q.*, B. Allam, and J.L. Collier. July 2009. Quantitative real-time PCR assay for QPX (Thraustochytriidae), a parasite of the hard clam (Mercenaria mercenaria). Applied and Environmental Microbiology 75(14):4913-4918. (doi: 10.1128/AEM.00246-09)

Baker, K.M.*, C.M. Gobler, and J.L. Collier. June 2009. Urease gene sequences from algae and heterotrophic bacteria in axenic and nonaxenic phytoplankton cultures. Journal of Phycology 45:625-634.

Glibert, Patricia M., Rhodora Azanza, Michele Burford, Ken Furuya, Eva Abal, Adnan Al-Azri, Faiza Al-Yamani, Per Andersen, Donald M. Anderson, John Beardall, G. Mine Berg, Larry Brand, Deborah Bronk, Justin Brookes, JoAnn M. Burkholder, Allan Cembella, William P. Cochlan, Jackie L. Collier, Yves Collos, Robert Diaz, Martina Doblin, Thomas Drennen, Sonya Dyhrman, Yasuwo Fukuyo, Miles Furnas, James Galloway, Edna Granéli, Dao Viet Ha, Gustaaf Hallegraeff, John Harrison, Paul J. Harrison, Cynthia A. Heil, Kirsten Heimann, Robert Howarth, Cécile Jauzein, Austin A. Kana, Todd M. Kana, Hakgyoon Kim, Raphael Kudela, Catherine Legrand, Michael Mallin, Margaret Mulholland, Shauna Murray, Judith O’Neil, Grant Pitcher, Yuzao Qi, Nancy Rabalais, Robin Raine, Sybil Seitzinger, Paulo S. Salomon, Caroline Solomon, Diane K. Stoecker, Gires Usup, Joanne Wilson, Kedong Yin, Mingjiang Zhou, and Mingyuan Zhu. 2008. Ocean urea fertilization for carbon credits poses high ecological risks. Marine Pollution Bulletin 56(6):1049-1056.

Qian, H.*, Q. Liu*, B. Allam, and J.L. Collier. 2007. Molecular genetic variation within and among isolates of QPX (Thraustochytridae), a parasite of the hard clam (Mercenaria mercenaria). Diseases of Aquatic Organisms 77:159-168. (doi: 10.3354/dao01848)

Foster, R.*, J.L. Collier, and E. Carpenter. 2006. Reverse transcription PCR amplification of cyanobacterial symbiont 16S rRNA sequences from single non-photosynthetic eukaryotic marine planktonic host cells. Journal of Phycology 42:243-250. (doi: 10.1111/j.1529-8817.2006.00185.x)

^Collier, J.L. 2004. Flow cytometry and the single compound in plankton ecology. Journal of Phycology 40: 805-807.

Collier, J.L. and B. Palenik. 2003. Phycoerythrin-containing picophytoplankton in the Southern California Bight. Deep-Sea Research Part II 50:2405-2422.

^Collier, J.L. 2000. Flow cytometry and the single cell in phycology. Journal of Phycology 36: 628-644.

Zani, S.*, M.T. Mellon, J.L. Collier, and J.P. Zehr. 2000. Expression of nifH genes in natural microbial assemblages in Lake George, NY detected with RT-PCR. Applied and Environmental Microbiology 66: 3119-3124. (doi: 10.1128/AEM.66.7.3119-3124.2000)

^Collier, J.L. and L. Campbell. 1999. Flow cytometry in molecular aquatic ecology. In: Molecular Ecology of Aquatic Ecosystems. J.P. Zehr, ed. Kluwer Academic Publishers. Dordrecht, The Netherlands. Hydrobiologia 401:33-53.

Collier, J.L., B. Brahamsha, and B. Palenik. 1999. The marine cyanobacterium Synechococcus sp.WH7805 requires urease (urea amidohydrolase, EC 3.5.1.5) to utilize urea as a nitrogen source: molecular genetic and biochemical analysis of the enzyme. Microbiology UK 145:447-459.

Collier, J.L., and A.R. Grossman. 1995. Disruption of a novel thioredoxin-like protein alters the cyanobacterial photosynthetic apparatus. Journal of Bacteriology 177:3269-3276.

Apt, K.E., J.L. Collier, and A.R. Grossman. 1995. The evolution of the phycobiliproteins. Journal of Molecular Biology 248:79-96.

Bhalerao, R.P., J.L. Collier, P. Gustaffson, and A.R. Grossman. 1995. The structure of phycobilisomes in mutants of Synechococcus sp. Strain PCC 7942 devoid of specific linker polypeptides. Photochemistry and Photobiology 61:298-302.

Collier, J.L., S.K. Herbert, D.C. Fork, and A.R. Grossman. 1994. Changes in the cyanobacterial photosynthetic apparatus during acclimation to macronutrient deprivation. Photosynthesis Research 42:173-183.

Collier, J.L. and A.R. Grossman. 1994. A small polypeptide triggers complete degradation of light-harvesting phycobiliproteins in nutrient-deprived cyanobacteria. EMBO (The European Molecular Biology Organization Journal) 13:1039-1047.

^Grossman, A.R., M.R. Schaefer, G.G. Chiang, and J.L. Collier. 1994. The responses of cyanobacteria to environmental conditions: light and nutrients. pp. 641-675. In: The Molecular Biology of Cyanobacteria. D.A. Bryant, ed. Kluwer Academic Publishers. Dordrecht, The Netherlands.

Grossman, A.R., M.R. Schaefer, G.G. Chiang, and J.L. Collier. 1993. Environmental effects on the light harvesting complex of cyanobacteria. Journal of Bacteriology 175:575-582.

Grossman, A.R., M.R. Schaefer, G.G. Chiang, and J.L. Collier. 1993. The phycobilisome: A light harvesting complex responsive to environmental conditions. Microbiological Reviews 57:725-749.

Collier, J.L. and A.R. Grossman. 1992. Chlorosis induced by nutrient deprivation in Synechococcus sp. strain PCC 7942: Not all bleaching is the same. Journal of Bacteriology 174:4718-4726.

Grossman, A.R., J.L. Collier, and D.E. Laudenbach. 1992. The response of Synechococcus sp. Strain PCC 7942 to sulfur-limited growth. In: Research in Photosynthesis. Proceedings of the IX International Congress on Photosynthesis, Vol IV. N. Murata, ed. Kluwer Academic Publishers, Dordrecht. pp. 3-10.

Farach-Carson, M.C., D.D. Carson, J.L. Collier, W.J. Lennarz, H.R. Park, and G.C. Wright. 1989. A calcium-binding, asparagine-linked oligosaccharide is involved in skeleton formation in the sea urchin embryo. Journal of Cell Biology 109:1289-1299.