SBU high performance computing clusters: FAQ

web security: http://www.onguardonline.gov/topics/avoid-scams

Journals:

• Cerebral Cortex
• Journal of Neuroscience
• Journal of Cognitive Neuroscience
• Neuroimage
• Nature Neuroscience
• Nature Neurosceince Review
• Nature Reviews Disease Primers

 Literature Search:

• Pubmed
• PsychInfo
• SBU e-journal

Neuroscience News: SFN news, networking

Statistics:

• Statistics How To
• Science Forum: Ten common statistical mistakes to watch out for when writing or reviewing a manuscript
• Ten simple rules for the computational modeling of behavioral data
• StatsSoft Electronic Statistics Textbook:
• UCLA online stats (e.g., R, SPSS, SAS, G Power, etc)
• JAMOVI User Manual to Create Reproducible R Code Using a Point and Click Interface

Unix shell, computational and programming tools:

• Introduction to the Unix shell
• Matlab tutorials by Software Carpentry (good for beginners)
• Python tutorials by Software Carpentry (good for beginners)
• Mathworks and matlab tutorial
• Mathworld

Neuroanatomy:

• BrainMaps.org
• Michigan State Univ’s Human Brain atlas

The Basics of MRI:

• Joseph Hornak’s online book
• Stuart Clare’s thesis on fMRI methods and applications
• how stuff works
• MRI tutor – Introduction to MRI physics
• Introduction to the Principles of MRI
• Carl D. Gregory (1998)  MRI Artifact Gallery

MRI Safety:

• http://www.mrisafety.com/
• http://www.radiology.upmc.edu/MRsafety/
• http://www.fda.gov/cdrh/safety/mrisafety.html
• http://web.mit.edu/mitmri/userinfo.htm
• mri-research-safety-ethics_33826-1g0odn5

Major fMRI toolboxes:

• SPM
• FSL
• AFNI
• Freesufer

NMR and fMRI software libraries and links

• Magnetic Resonance Sites on the Web
• Links to Internet resources related to fMRI
• NITRC- the source for neuroimaging tools and resources
• UCLA ICBM Software links
• Imaging databases: http://loni.usc.edu/?project=ICBM
• Resting state fMRI

fMRI Design and Analysis:

• Rik Henson on fMRI efficiency
  
• Dale’s Optimal sequence
  
• MRC CBSU Wiki (see spatial smooth, random field theory, etc)

fMRI online courses:

• fMRI for newbies (this is pretty good)
• MIT’s fMRI data acquisition and analysis
  
• Duke’s Fall 2008 fMRI course
  
• FMRIB’s FSL course
• SPM introduction

DTI

• http://iacl.ece.jhu.edu/~bennett/research.shtml
• http://www.sph.sc.edu/comd/rorden/workshop/fsl/dti/
• CATNAP DTI tools: http://iacl.ece.jhu.edu/~bennett/catnap/catnap.shtml

Spectroscopy: http://www.spectroscopynow.com/nmr

 Psychological experiments

• PsychToolbox
• Eprime
• Presentation
• PsychoPy

Visual Stimulus Database (faces, scenes, objects, movies)

• http://pics.psych.stir.ac.uk/
• http://titan.cog.brown.edu:8080/TarrLab//stimuli
• http://calphotos.berkeley.edu/

Other interests:

• Arts of Sciences
• Art and Neuroscience