Publications in 2015

Vitaly Citovsky

Bar-Ziv, A., Levy, Y., Citovsky, V., & Gafni, Y. (2015). The Tomato yellow leaf curl virus (TYLCV) V2 protein inhibits enzymatic activity of the host papain-like cysteine protease CYP1. Biochem. Biophys. Res. Comm. 460, 525-529.

Lacroix, B. & Citovsky, V. (2015) Genetically modified organisms, plant transformation by Agrobacterium. In Discoveries in Modern Science: Exploration, Invention, Technology (J. Trefil, ed.), Farmington Hills: Macmillan, pp. 425-431.

Yuan, C., Lazarowitz, S.G., & Citovsky, V. (2015) Identification of a functional plasmodesmal localization signal in a plant viral cell-to-cell movement protein. mBio 7, e02052-15.

Lacroix, B. & Citovsky, V. (2015) Nopaline-type Ti plasmid of Agrobacterium encodes a VirF-like functional F-box protein. Sci. Rep. 5, 16610.

García-Cano, E., Magori, S., Lazarowitz, S.G., & Citovsky, V. (2015) Interaction of Arabidopsis trihelix-domain transcription factors VFP3 and VFP5 with Agrobacterium virulence protein VirF. PLOS ONE 10, e014212.

Nancy Hollingsworth

Liu, Y., W. Gaines, T. Callender, V. Busygina, A. Oke, P. Sung, J. Fung and N. M. Hollingsworth (2014) Down-regulation of Rad51 activity during meiosis in yeast prevents competition with Dmc1 for repair of double-strand breaks.  PLoS Genet.  10:e1004005 doi:10.1371/journalpgen.1004005

Suhandynata, R., J. Liang, C. P. Albuquerque, H. Zhou and N. M. Hollingsworth (2014) A method for sporulating budding yeast cells that allows for unbiased identification of kinase substrates using stable isotope labeling by amino acids in cell culture.  G3 4: 2125-2135.

Chen, X., R. T. Suhandynata, R. Sandhu, B. Rockmill, N. Mohibullah, H. Niu, J. Liang, H-C Lo, D. E. Miller, H. Zhou, G. V. Börner, and N. M. Hollingsworth.  (2015) Phosphorylation of the synaptonemal complex protein Zip1 regulates the crossover/noncrossover decision during yeast meiosis.  PLoS Biol 13(12): e1002329. doi: 10.1371/journal.pbio.1002329

Hollingsworth, N. M. (2016) Mek1/Mre4 is a master regulator of meiotic recombination in budding yeast.  Microbial Cell (in press).

Hulin Li

Sun J, Yuan Y, Stillman B, C Speck, Li H. Structure and Function of Replication Initiation Factors. 2016, pp 427-441, Chapter 21 in “The Initiation of DNA Replication in Eukaryotes”, Edited by Daniel Kaplan, published by Springer 2016.

1. Bai L, Hu K, Wang T, Jastrab JB, Darwin KH, Li H.  Structural analysis of the dodecameric proteasome activator PafE in Mycobacterium tuberculosis. Proc Natl Acad Sci U S A, in print.2. Yuan Z, Bai L, Sun J, Georgescu R, Liu J, O’Donnell ME, Li H. Atomic structure of the eukaryotic replicative CMG helicase by cryo-EM and implication to DNA unwinding, Nat Struct Mol Biol. 2016 Feb 8. doi: 10.1038/nsmb.3170
3.Liu W, Tarawa M, Xin H, Wang T, Emamy H, Li H, Yager KG, Starr FW, Tkachenko AV, Gang O. Diamond family of nanoparticle superlattices. Science, 2016 Feb 5;351(6273):582-6. doi: 10.1126/science.aad2080.
4. Tian Y, Zhang Y, Wang T, Li H, Gang O. Lattice Engineering via Nanoparticle-DNA Frameworks. Nature Materials, 2016 Feb 22. doi: 10.1038/nmat4571.
5. Eswaramoorthy S, Sun J, Li H, Singh BR, Swaminathan S. Molecular Assembly of Clostridium botulinum progenitor M complex of type E. Scientific reports. 2015; 5:17795.6. Sun J, Shi Y, Georgescu RE, Yuan Z, Chait BT, Li H, O’Donnell ME. The Architecture of a Eukaryotic Replisome. Nat Struct Mol Biol. 2015; 22(12):976-82.
7. Yu H, Takeuchi M, LeBarron J, Kantharia J, London E, Bakker H, Haltiwanger RS, Li H, Takeuchi H. Notch-modifying xylosyltransferase structures support an SNi-like retaining mechanism. Nat Chem Biol. 2015 Nov;11(11):847-54.
8. Chang F, Riera A, Evrin C, Sun J, Li H, Speck C, Weinreich M. Cdc6 ATPase activity disengages Cdc6 from the pre-replicative complex to promote DNA replication. Elife. 2015 Aug 25;4.
9. Werneburg G, Henderson NS, Portnoy EB, Sarowar S, Hultgren SJ, Li H, and Thanassi DG. The Pilus Usher Uses Domain Masking to Control Protein-Protein Interactions During Pilus Biogenesis and Functions as an Oligomer In Vivo. Nat Struct Mol Biol., 2015 Jul;22(7):540-6.
10. Jastrab JB, Wang T, Murphy JP, Bai L, Hu K, Merkx R, Huang J, Chatterjee C, Ovaa H, Gygi SP, Li H, and Darwin KH. An adenosine triphosphate-independent proteasome activator contributes to the virulence of Mycobacterium tuberculosis. Proc Natl Acad Sci U S A. 2015, 112, E1763-72.
11. Tian Y, Wang T, Liu W, Xin H, Li H, Ke Y, Shih W, Gang O. Mesoscale 3D Nanoparticle Clusters with Prescribed Architectures. Nature Nanotechnology 2015 Jul;10(7):637-44
12. Sun J, Fernandez-Cid A, Riera A, Zuanning Yuan, Stillman B, Speck C, Li H. Structural and mechanistic insights into licensing of DNA replication. Genes Dev, 2014, 28, 2291-303.
13. Samel SA, Fernández-Cid A, Sun J, Riera A, Tognetti S, Herrera MC, Li H, Speck C. A unique DNA entry gate serves for regulated loading of the eukaryotic replicative helicase MCM2-7 onto DNA. Genes Dev. 2014, 28, 1653-66.
14. Burgie ES, Wang T, Bussell AN, Walker JM, Li H, Vierstra RD. Crystallographic and electron microscopic analyses of Deinococcus radiodurans phytochrome reveal a large-scale reorientation of the output module relative to the sensory module during photoconversion. J Biol Chem. 2014, 289, 24573-24587.
15. Sanson B, Wang T, Sun J, Wang L, Kaczocha M, Ojima I, Deutsch D, Li H. Crystallographic study of FABP5 as an intracellular endocannabinoid transporter. Acta Crystallogr D Biol Crystallogr. 2014, 70, 290-8.

 

Erwin London

Lin, Q., and London, E. (2015) Lin “Ordered Raft Domains Induced by Outer Leaflet Sphingomyelin in Cholesterol-Rich Asymmetric Vesicles” Biophys. J., 108, 2212-2022.

London, E. (2015) “Membrane Fusion: A New Role For  Membrane Domains?” Nature Chemical Biology, 11, 383 – 384.

Farnoud, A, Toledo, A.M., Konopka J.B., Del Poeta, M., London, E. (2015) “Raft-Like Membrane Domains in Pathogenic Microorganisms”, Current Topics in Membranes, Volume 75 “Membrane Domains” (A. Kenworthy, Editor), Academic Press/Elsevier, Amsterdam, pages 233-268.

Lin, Q., Wang, T., Li. H, and London, E. (2015) “Decreasing Transmembrane Segment Length Greatly Decreases Perfringolysin O Pore Size”, J. Memb. Biol. 248, 517-527.

Kim, J., and London, E. (2015) “Using sterol substitution to probe the role of membrane domains in membrane functions” Lipids 50, 721-734.

Pathak, P. and London, E. (2015) “Effect of Membrane Lipid Composition Upon the Formation of Ultra-Nanodomains”, Biophys. J., 109, 1630-1638.

Yu, H., Takeuchi, M., LeBarron, J., Kantharia, J., London, E., Bakker, H., Haltiwanger, R.S., Li, H., Takeuchi, H. (2015) “Structures of a Notch-modifying xylosyltransferase support an SNi-like retaining mechanism”, Nature Chemical Biology, 11,847-854.

Aaron Neiman

Jin, L., Zhang, K., Xu, Y., Sternglanz, R., Neiman, A.M. (2015).  Sequestration of mRNAs Modulates the Timing of Translation during Meiosis in Budding Yeast.  Mol Cell Biol. 35:3448-3458.

Park, J.-S., Halegoua, S., Kishida, S., and Neiman, A. M. (2015).  A conserved function in phosphatidylinositol metabolism for mammalian Vps13 family proteins.  PLoS One, 10:e0124836

 Jin, L. and Neiman, A. M. (2015) Post-transcriptional regulation in budding yeast meiosis Curr Genet. epub 17Nov

Lonnie Wollmuth

Alsaloum, M., R. Kazi, Q. Gan, J. Amin, and P. Wollmuth (2016) A molecular determinant of subtype-specific desensitization in ionotropic glutamate receptors. Journal of Neuroscience. In press.

Gan, Q., Dai, H-X. Zhou, and L. P. Wollmuth (2016) The transmembrane domain mediates tetramerization of α-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid (AMPA) receptors. Journal of Biological Chemistry. In press.

Gan, Q., C. L. Salussolia, and P. Wollmuth (2015) Assembly of AMPA receptors: mechanisms and regulation. The Journal of Physiology. Invited review. 593:39-48.

Wollmuth, L. P (2015) Is cholesterol good or bad for your brain? – NMDARs have a say. The Journal of Physiology. Invited commentary.

Salussolia, C. L., Q. Gan, and P. Wollmuth (2015) Assaying AMPA receptor oligomerization. In: Ionotropic glutamate receptor technologies, G. Popescu, editor.  Humana Press.  Volume 106:3-14.

Kazi, R., M. Daniel, and P. Wollmuth (2015) Characterizing the thermodynamics of NMDA receptor pore opening. In: Ionotropic glutamate receptor technologies, G. Popescu, editor.  Humana Press.  Volume 106:145-162.

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