Allam, Bassem
Perrigault M., A. Tanguy and B. Allam. 2009. Indentification and quantification of differentially expressed genes in the hard clam, Mercenaria mercenaria, in response to quahog parasite unknown (QPX). BMC Genomics 10: 377. doi:10.1186/1471-2164-10-377
Pales Espinosa, E., M. Perrigault, J.E. Ward, S.E. Shumway and B. Allam. 2009. Lectins associated with the feeding organs of the oyster Crassostrea virginica can mediate particle selection. Biological Bulletin 217(2): 130-141.
Perrigault, M. and B. Allam. 2009. Cytotoxicity of Quahog Parasite Unknown (QPX) toward hard clam (Mercenaria mercenaria) haemocytes and interactions between different pathogen isolates and host strains. Parasitology136(11): 1281-1289.
Liu, Q., B. Allam and J.L. Collier. 2009. A quantitative real-time PCR assay for QPX (Thraustochytridae), a parasite of the hard clam (Mercenaria mercenaria). Applied and Environmental Microbiology 75(13): 4913-4918.
Ford, S.E., B. Allam and Z. Xu. 2009. Using PCR and bivalve “particle collectors” to investigate the environmental distribution of Haplosporidium nelsoni, the agent of MSX disease in eastern oysters. Diseases of Aquatic Organisms83(2): 159-168.
Bettencourt, R., P. Dando, P. Collins, V. Costa, B. Allam and S.R. Serrão. 2009. Innate immunity in the deep sea hydrothermal vent mussel Bathymodiolus azoricus. Comparative Biochemistry and Physiology Part A 152(2): 278-289.
Perrigault, M., D.M. Buggé C.C. Hao and B. Allam. 2009. Modulatory effects of hard clam (Mercenaria mercenaria) tissue extracts on the in vitro growth of its pathogen QPX. Journal of Invertebrate Pathology 100(1): 1-8.
Aller, Robert
Przeslawski, R., Q. Zhu and R. Aller, 2009, Effects of abiotic stressors on infaunal burrowing and associated sediment characteristics. Marine Ecology Progress Series 392: 33-42.
Armstrong, Robert
Lee, C., R.A. Armstrong, J.K. Cochran, A. Engel, S.W. Fowler, M. Goutx, P. Masqué, J.C. Miquel, M. Peterson C. Tamburini and S. Wakeham. 2009. MedFlux: Investigations of particle flux in the Twilight Zone. Deep-Sea Research II56(18): 1363-1368.
Moriceau, B., M. Goutx, C. Guigue, C. Lee, R.A. Armstrong, M. Duflos, C. Tamburini, B. Charrière and O. Ragueneau. 2009. Si-C interactions during degradation of the diatom Skeletonema marinoi. Deep-Sea Research II 56(18): 1381-1395.
Lee, C., M.L. Peterson,S.G. Wakeham, R.A. Armstrong, J.K. Cochran, J.C. Miquel, S.W. Fowler, D. Hirschberg, A. Beck and J. Xue. 2009. Particulate organic matter and ballast fluxes measured using time-series and settling velocity sediment traps in the northwestern Mediterranean Sea. Deep-Sea Research II 56(18): 1420-1436.
Armstrong, R.A., M.L. Peterson, C. Lee and S.G. Wakeham. 2009. Settling velocity spectra and the ballast ratio hypothesis. Deep-Sea Research II 56(18): 1470-1478.
Rapaglia, J.P. and H. J. Bokuniewicz, 2009. The effect of groundwater advection on salinity in pore waters of permeable sediments. Limnology and Oceanography 54 (2): 630–643.
Garcia-Orellana, J., J.K. Cochran, H. Bokuniewicz. S. Yang and A. Beck. 2009. Time-series sampling of 223Ra and224Ra at the inlet to Great South Bay (New York): a strategy for characterizing the dominant terms in the Ra budget of the bay. Journal of Environmental Radioactivity 101(7): 582-588.
Rapaglia, J.P. and H. J. Bokuniewicz. 2009. The effect of groundwater advection on salinity in pore waters of permeable sediments. Limnology and Oceanography: 54: 630–643
Brownawell, Bruce
Benotti M.J. and B.J. Brownawell. 2009. Microbial degradation of pharmaceuticals in estuarine and coastal seawater.Environmental Pollution 157(3): 994-1002.
Li, X. and B.J. Brownawell. 2009. Analysis of quaternary ammonium compounds in estuarine sediments by LC-ToF-MS: very high positive ion mass defects of alklamine ions as powerful diagnostic tools for identification and structural elucidation. Analytical Chemistry 81(19): 7926-7935.
Lonsdale, D.J., R.M. Cerrato, R. Holland, A. Mass, L. Holt, R. Schaffner, J. Pan and D. A. Caron. 2009. Influence of suspension-feeding bivalves on the pelagic food webs of shallow, coastal embayments. Aquatic Biology 6: 263-279.
Chang, Edmund
Chang, E.K.M, 2009: Diabatic and orographic forcing of northern winter stationary waves and storm tracks, J. Climate, 22, 670-688. DOI:10.1175/2008JCLI2403.1
Chang, E.K.M. 2009: Are band-pass variance statistics useful measures of storm track activity? Re-examining storm track variability associated with the NAO using multiple storm track measures. Climate Dynamics 33(2-3): 277-296.
Guo, Y., E.K.M. Chang and S.S. Leroy. 2009: How strong are the Southern Hemisphere storm tracks? Geophysical Research Letters 36 L22806 doi:10.1029/2009GL040733.
Chapman, Demian
Chapman, D.D., et al. 2009. Natal site-fidelity in immature lemon sharks, Negaprion brevirostris, at a subtropical island. Molecular Ecology 18(16): 3500-3507.
Chapman, D.D., D. Pinhal and M.S. Shivji. 2009. Genetic stock identification in endangered scalloped hammerhead sharks, Sphyrna lewini. Endangered Species Research 9:221-228.
Cochran J. Kirk
Kolker, A. S., S. L. Goodbred, Jr., S. Hameed and J. K. Cochran. 2009. High-resolution records of the response of coastal wetland systems to long-term and short-term sea-level variability. Estuarine, Coastal and Shelf Science 84(4): 493-508.
Colle, Brian
Charles, M. and B. A. Colle. 2009. Verification of extratropical cyclones within cyclones within NCEP forecast models using an automated tracking algorithm: Part 1: Comparison of the GFS and NAM models. Weather and Forecasting24(5): 1173-1190.
Charles, M. and B. A. Colle. 2009. Verification of extratropical cyclones within cyclones within NCEP forecast models using an automated tracking algorithm: Part 2: Evaluation of the Short-Range Ensemble Forecast (SREF) system.Weather and Forecasting 24(5): 1191-1214.
Novak, D., B. A. Colle and R. McTaggart-Cowan. 2009: The role of moist processes in the formation and evolution of mesoscale snowbands within the comma-head of Northeast U.S. cyclones. Monthly Weather Review 137(8): 2662-2686.
Lin, Y. and B. A. Colle. 2009: Observed and simulated cloud microphysics over the Oregon Cascades during the 4-5 December IMPROVE-2 IOP, Monthly Weather Review 137(4): 1372-1392.
Collier, Jackie
Collier J.L., K.M. Baker and S.L. Bell. 2009. Diversity of urea-degrading microorganisms in open-ocean and estuarine planktonic communities. Environmental Microbiology 11(12): 3118-3131.
Liu, Q., B. Allam and J.L. Collier. 2009. Quantitative real-time PCR assay for QPX (Thraustochytriidae), a parasite of the hard clam (Mercenaria mercenaria). Applied and Environmental Microbiology 75(14): 4913-4918.
Baker, K.M., C.M. Gobler and J.L. Collier. 2009. Urease gene sequences from algae and heterotrophic bacteria in axenic and nonaxenic phytoplankton cultures. Journal of Phycology 45(3): 625-634.
Vogel, C. and N.S. Fisher. 2009. Trophic transfer of Fe, Zn, and Am from marine bacteria to a planktonic ciliate. Marine Ecology Progress Series 384: 61-68
Mathews, T. and N.S. Fisher. 2009. Dominance of dietary intake of metals in marine elasmobranch and teleost fish. Science of the Total Environment 407: 5156-5161
Flood, Roger
Flood, R.D., R.N Hiscott and A.E. Aksu. 2009. Morphology and evolution of an anastomosed channel network where saline underflow enters the Black Sea. Sedimentology 56: 807-839.
Cheng, P., R. Wilson, R.J. Chant, D.C Fugate and R.D. Flood. 2009. Modeling influence of stratification on lateral circulation in a stratified estuary. Journal of Physical Oceanography 39(9): 2324-2337.
Frisk, Michael
Frisk, M.G. and T.J. Miller. 2009. Maturation of little skate, Leucoraja erinacea, and winter skate, Leucoraja ocellata in the western Atlantic from Cape Hatteras to Georges Bank. Marine and Coastal Fisheries, 1(1) pp. 1-10.
Geller, M. A. and M.-L. Chanin. 2009. SPARC Science Supporting the Montreal Protocol. Pages 392-402 in: C. Zerefos, G. Contopoulos and G. Skalkeas (eds.) Twenty Years of Ozone Decline. Proceedings of the Symposium for the 20th Anniversary of the Montreal Protocol. Springer, 472p.
Geller, M. A. 2009. The 1960s—a decade of remarkable advances in middle atmosphere research. Pages 1-22 in . Tsuda, T., R. Fujii, K. Shibata and M. A. Geller (eds.) Climate and Weather of the Sun-Earth System (CAWSES). Selected Papers from the 2007 Kyoto Symposium.TERRAPUB, Tokyo.
Tsuda, T., R. Fujii, K. Shibata and M. A. Geller. 2009. Climate and Weather of the Sun-Earth System (CAWSES). Selected Papers from the 2007 Kyoto Symposium. TERRAPUB, Tokyo.
Gobler, Christopher
Panzeca, C., A. Tovar-Sanchez, J. Segovio-Zavala, G.T. Taylor, C. J. Gobler and S. Sañudo-Wilhelmy 2009. Cycling of dissolved vitamin B12, trace metals, and inorganic nutrients in a western boundary upwelling system off Mexico.Estuarine Coastal and Shelf Science 85(2): 223-230.
Tang Y.Z. and C.J. Gobler. 2009. Cochlodinium polykrikoides blooms and clonal isolates from the northwest Atlantic coast cause rapid mortality in larvae of multiple shellfish species. Marine Biology 156(12): 2601-2611.
Jiang, X,, Y.Z. Tang, D.J. Lonsdale and C.J. Gobler. 2009. Deleterious consequences of a red tide dinoflagellateCochlodinium polykrikoides (Margalef) for the calanoid copepod Acartia tonsa (Dana). Marine Ecology Progress Series 390: 105–116.
Talmage, S.C. and C.J. Gobler. 2009. The effects of elevated carbon dioxide concentrations on the metamorphosis, size, and survival of larval hard clams (Mercenaria mercenaria), bay scallops (Argopecten irradians), and Eastern oysters (Crassostrea virginica). Limnology and Oceanography 54(6): 2072–2080.
Rose, J.M., Y. Feng, C.J. Gobler, R. Gutierrez, C.E. Hare, K. Leblanc and D.A. Hutchins. 2009. The effects of increased pCO2 and temperature on the North Atlantic Spring Bloom. II. Microzooplankton abundance and grazing. Marine Ecology Progress Series 388: 27–40.
Newell, R.E., S.T. Tettelbach, C.J. Gobler and D.G. Kimmel. 2009. Relationships between reproduction in suspension-feeding hard clams, Mercenaria mercenaria, and phytoplankton community structure. Marine Ecology Progress Series 387:179-196.
Mulholland, M.R., R.E. Morse, G.E. Boneillo, P.W. Bernhardt, K.C. Filippino, L.A. Procise, J. Blanco, H.G. Marshal, T.A.Edgerton, W.S. Hunley, K.A. Moore, D.L. Berryand and C.J. Gobler. 2009. Understanding causes and impacts of the dinoflagellate, Cochlodinium polykrikoides, blooms in the Chesapeake Bay. Estuaries and Coasts 32(4): 734-747.
Baker. K.M., C.J. Gobler and J.L. Collier. 2009. Urease gene sequences from algae and heterotrophic bacteria in axenic and nonaxenic cultures. Journal of Phycology 45(3): 625–634.
Davis, T.W., D.L. Berry, G.L. Boyer and C.J. Gobler, 2009. The effects of temperature and nutrients on the growth and dynamics of toxic and non-toxic strains of Microcystis during cyanobacteria blooms. Harmful Algae 8(5): 715–725.
Koch, F. and C.J. Gobler, 2009. The effects of tidal export from salt marsh ditches on estuarine water quality and plankton communities, Estuaries and Coasts 32(2): 261-275.
Vigil, P., P.D. Countway, J. Rose, D.J. Lonsdale, C.J. Gobler and D.A. Caron. 2009. Rapid shifts in dominant taxa among microbial eukaryotes in estuarine ecosystems. Aquatic Microbial Ecology 54(1): 83–100.
Tang Y.Z. and C.J. Gobler. 2009. Characterization of the toxicity of Cochlodinium polykrikoides isolates from Northeast US estuaries to finfish and shellfish. Harmful Algae 8(3): 454-462.
Jordi, A. and S. Hameed, 2009. Influence of the Icelandic Low on the variability of surface air temperature in the Gulf of Lion: implications for intermediate water formation. Journal of Physical Oceanography 39(12): 3228-3232.
Khairoutdinov M. F., S. K. Krueger, C.-H. Moeng, P. A. Bogenschutz,and D. A. Randall. 2009. Large-eddy simulation of maritime deep tropical convection. Journal of Advances in Modelling Earth Systems Volume 1, Article #15, 13p.
Moeng C. H., M. A. LeMone, M. F. Khairoutdinov, S. K. Krueger, P. A. Bogenschutz and D. A. Randall. 2009. The tropical marine boundary layer under a deep convection system: a large-eddy simulation study. Journal of Advances in Modelling Earth Systems Volume 1, Article #16, 13p.
Mapes, B., J. Bacmeister, M. Khairoutdinov, C. Hannay and M. Zhao. 2009. Virtual field campaigns on deep tropical convection in climate models. Journal of Climate 22(2): 244-257.
Ackerman, A. S., M. C. vanZanten, B. Stevens, V. Savic-Jovcic, C. S. Bretherton, A. Chlond, J.-C. Golaz, H. Jiang, M. Khairoutdinov, S. K. Krueger, D. C. Lewellen, A. Lock, C.-H. Moeng, K. Nakamura, M. D. Petters, J. R. Snider and S. Weinbrecht and M. Zulauf. 2009. Large-eddy simulations of a drizzling, stratocumulus-topped marine boundary layer.Monthly Weather Review 137(3): 1083-1110.
Tao, W. K., J.-D. Chern, R. Atlas, D. A. Randall, M. F. Khairoutdinov, J.-L. Li, D. E. Waliser, A. Hou, X. Lin, C. Peters-Lidard, W. Lau, J. Jiang and J. Simpson. 2009: A multiscale modeling system: developments, applications and critical issues. Bulletin of the American Meteorological Society 90(4): 515-534.
Knopf, Daniel
Springmann, M., D.A. Knopf, and N. Riemer. 2009. Detailed heterogeneous chemistry in an urban plume box model: reversible co-adsorption of O3, NO2, and H2O on soot coated with benzo[a]pyrene. Atmospheric Chemistry and Physics 9(19): 7461–7479.
Knopf, D. A. and M.D. Lopez. 2009. Homogeneous ice freezing temperatures and ice nucleation rates of aqueous ammonium sulfate and aqueous levoglucosan particles for relevant atmospheric conditions. Physical Chemistry Chemical Physics 11: 8056–8068.
Lee, C., R.A. Armstrong, J.K. Cochran, A. Engel, S.W. Fowler, M. Goutx, P. Masqué, J.C. Miquel, M. Peterson C. Tamburini and S. Wakeham. 2009. MedFlux: Investigations of particle flux in the Twilight Zone. Deep-Sea Research II56(18): 1363-1368.
Abramson, L., S. Wirick, C. Lee, C. Jacobsen and J.A. Brandes. 2009. The use of soft X-ray spectromicroscopy to investigate the distribution and composition of organic matter in a diatom frustule and a biomimetic analog. Deep-Sea Research II 56(18): 1369-1386.
Moriceau, B., M. Goutx, C. Guigue, C. Lee, R.A. Armstrong, M. Duflos, C. Tamburini, B. Charrière and O. Ragueneau. 2009. Si-C interactions during degradation of the diatom Skeletonema marinoi. Deep-Sea Research II 56(18): 1381-1395.
Engel. A., J. Szlosek, L. Abramson, Z. Liu and C. Lee. 2009. Investigating the effect of ballasting by CaCO3 in Emiliania huxleyi: I. Formation, settling velocities and physical properties of aggregates. Deep-Sea Research II 56(18): 1396-1407.
Engel, A., L. Abramson, J. Szlosek, Z. Liu, G. Stewart, D. Hirschberg and C. Lee. 2009. Investigating the effect of ballasting by CaCO3 in Emiliania huxleyi: II. Decomposition of particulate organic matter. Deep-Sea Research II56(18): 1408-1419.
Lee, C., M.L. Peterson,S.G. Wakeham, R.A. Armstrong, J.K. Cochran, J.C. Miquel, S.W. Fowler, D. Hirschberg, A. Beck and J. Xue. 2009. Particulate organic matter and ballast fluxes measured using time-series and settling velocity sediment traps in the northwestern Mediterranean Sea. Deep-Sea Research II 56(18): 1420-1436.
Wakeham, S.G., C. Lee, M.L. Peterson, Z. Liu, J. Szlosek, I. Putnam and J. Xue. 2009. Organic biomarkers in the Twilight Zone – time series and settling velocity sediment traps during MEDFLUX. Deep-Sea Research II 56(18): 1437-1453.
Armstrong, R.A., M.L. Peterson, C. Lee and S.G. Wakeham. 2009. Settling velocity spectra and the ballast ratio hypothesis. Deep-Sea Research II 56(18): 1470-1478.
Tamburini, C., M. Goutx, C. Guigue, M. Garel, D. Lefèvre, B. Charrière, R. Sempéré, S. Pepa, M.L. Peterson, S.G. Wakeham and C. Lee. 2009. Effects of hydrostatic pressure on microbial alteration of sinking fecal pellets. Deep-Sea Research II 56(18): 1533-1546.
Peterson, M.L., J. Fabres, S.G. Wakeham, C. Lee, I.J. Alonso and J.C. Miquel. 2009. Sampling the vertical particle flux in the upper water column using a large diameter free-drifting NetTrap adapted to an indented rotating sphere sediment trap. Deep-Sea Research II 56(18): 1547-1557.
Liu, Z., J.K. Cochran, C. Lee, B. Gasser, J.C. Miquel and S.G. Wakeham. 2009. Further investigations on why POC concentrations differ in samples collected by Niskin bottle and in situ pump. Deep-Sea Research II 56(18): 1558-1567.
Liu, Z. J. Mao, M.L. Peterson, C. Lee, S.G. Wakeham and P.G. Hatcher. 2009. Characterization of sinking particles from the northwest Mediterranean Sea using advanced solid-state NMR. Geochimica et Cosmochimica Acta 73(4): 1014-1026.
Mulholland, M.R. and C. Lee. 2009. Peptide hydrolysis and the uptake of dipeptides by phytoplankton. Limnology and Oceanography 54(3): 856–868.
Alonso-González, I.J., J. Arístegui, C. Lee and A. Calafat. 2010. Regional and temporal variability of sinking organic matter in the subtropical northeast Atlantic Ocean: a biomarker diagnosis. Biogeosciences Discussions 7(7) 2101-2115.
Lonsdale, Darcy
Lonsdale, D.J., R.M. Cerrato, R. Holland, A. Mass, L. Holt, R. Schaffner, J. Pan and D. A. Caron. 2009. Influence of suspension-feeding bivalves on the pelagic food webs of shallow, coastal embayments. Aquatic Biology 6: 263-279.
Jiang, X,, Y.Z. Tang, D.J. Lonsdale and C.J. Gobler. 2009. Deleterious consequences of a red tide dinoflagellateCochlodinium polykrikoides (Margalef) for the calanoid copepod Acartia tonsa (Dana). Marine Ecology Progress Series 390: 105–116.
Vigil, P., P.D. Countway, J. Rose, D.J. Lonsdale, C.J. Gobler and D.A. Caron. 2009. Rapid shifts in dominant taxa among microbial eukaryotes in estuarine ecosystems. Aquatic Microbial Ecology 54(1): 83–100.
Weisbrod, A.V., K.B. Woodburn, A.A. Koelmans, T.F. Parkerton, A. E. McElroy and K. Borgå. 2009. Evaluation of bioaccumulation using whole organism lab and field studies. Integrated Environmental Assessment and Management 5(4): 598-623.
Taylor, G.T., R. Thunell, R. Varela, C. Benitez-Nelson and M.I. Scranton. 2009. Hydrolytic ectoenzyme activity associated with suspended and sinking organic particles within the anoxic Cariaco Basin. Deep-Sea Research I56(8): 1266-1283.
Gooday, A.J., F. Jorissen, L.A. Levin, J.J. Middleburg, S.W.A. Naqvi, N.N. Rabalais, M. Scranton and J. Zhang. 2009. Historical records of coastal eutrophication-induced hypoxia. Biogeosciences 6(8): 1707-1745.
Taylor, G.T., R. Thunell, R. Varela, C. Benitez-Nelson and M.I. Scranton. 2009. Hydrolytic ectoenzyme activity associated with suspended and sinking organic particles within the anoxic Cariaco Basin. Deep-Sea Research I56(8): 1266-1283.
Panzeca, C., A.J. Beck, A. Tovar-Sanchez, J. Segovio-Zavala, C.J. Gobler, G.T. Taylor and S.A. Sañudo-Wilhelmy. 2009. Distributions of dissolved vitamin B12 and Co in coastal and open-ocean marine systems. Estuarine, Coastal and Shelf Science 85(2): 223-230.
Li X, Taylor GT, Astor Y, Scranton MI. 2009. Relationship of sulfur speciation to hydrographic conditions and chemoautotrophic production in the Cariaco Basin. Mar. Chem. 112: 53–64
Jordi, A., G. Basterretxea, and D. Wang, 2009. Evidence of sediment resuspension by island trapped waves.Geophysical Research Letters 36 L18610, doi:10.1029/2009GL040055
Wei, J. and D.-P. Wang, 2009. A three-dimensional model study of warm core ring with continental shelf and slope.Continental Shelf Research 29(13): 1635-1642.
Jordi, A. and D.-P. Wang, 2009. Mean dynamic topography and eddy kinetic energy in the Mediterranean Sea: comparison between altimetry and a 1/16 degree ocean circulation model. Ocean Modeling 29(2): 137-146.
Warren, Joseph
M.J. Cox, D.A. Demer, J.D. Warren, G.R. Cutter, and A.S. Brierley. 2009. Multibeam echosounder observations reveal interactions between Antarctic krill and air-breathing predators . Marine Ecology Progress Series 378: 199-209. doi: 10.3354/meps07795
J.D. Warren, J.A. Santora, and D.A. Demer. 2009. Submesoscale distribution of Antarctic krill and its avian and pinniped predators before and after a near gale. Marine Biology 156: 479-491. doi: 10.1007/s00227-008-1102-0
Wilson, Robert
Cheng, P., R. Wilson, R.J. Chant, D.C Fugate and R.D. Flood. 2009. Modeling influence of stratification on lateral circulation in a stratified estuary. Journal of Physical Oceanography 39(9): 2324-2337.
Zeng X., W. Tao, M. Zhang, A.Y. Hou, S. Xie, S. Lang, X. Li, D.O. Starr and X Li. 2009. A contribution by ice nuclei to global warming. Quarterly Journal Royal Meteorological Society 135 (Part B): 1614-1629.
Lin, W., M. Zhang, and J. Wu. 2009. Simulation of low clouds from the CAM and the regional WRF with multiple nested resolutions. Geophysical Research Letters 36 L08813, doi:10.1029/2008GL037088
Lin, W., M. Zhang, and N.G. Loeb. 2009. Seasonal variation of the physical properties of marine boundary layer clouds off the California coast. Journal of Climate 22(10): 2624-2638.
Zeng, X., W.K. Tao, M. Zhang, A.Y. Hou, S. Xie, S. Lang, X. Li, D.O. Starr, X. Li and J. Simpson. 2009. An indirect effect of ice nuclei on atmospheric radiation. Journal of the Atmospheric Sciences 66(1): 41–61.
Zhu, Qingzhi
Przeslawski, R., Q.Z. Zhu and R. Aller. Effects of abiotic stressors on infaunal burrowing and associated sediment characteristics. Marine Ecology Progress Series 392: 33-42.
