Publications

Peer-reviewed publications by SoMAS Faculty

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Lotfikatouli, S., Pan, Q., Wang, M., Russo, F. M., Gobler, C. J., & Mao, X. (2024). Effective nitrogen removal from onsite wastewater using a sequencing aerated biofilm reactor. Journal of Water Process Engineering, 60, 105132.

Knopf, D. A., Ammann, M., Berkemeier, T., Pöschl, U., and Shiraiwa, M. (2024) Desorption lifetimes and activation energies influencing gas–surface interactions and multiphase chemical kinetics, Atmos. Chem. Phys., 24, 3445–3528, https://doi.org/10.5194/acp-24-3445-2024, 2024.

Gallagher, K. L., Cimino, M. A., Dinniman, M. S., & Lynch, H. J. (2024). Quantifying potential marine debris sources and potential threats to penguins on the West Antarctic Peninsula. Environmental Pollution, 123714.

Cohen, A. B., Christensen, L. N., Weber, F., Yagudaeva, M., Lo, E., Henkes, G. A., … & Taylor, G. T. (2024). Preserved particulate organic carbon is likely derived from the subsurface sulfidic photic zone of the Proterozoic Ocean: evidence from a modern, oxygen‐deficient lake. Geobiology, 22(2), e12593.

Motlagh, F., Hamideh, S., Gallagher, M., Yan, G., & van de Lindt, J. W. (2024). Bonds for disaster resilience: A review of literature and practice. International Journal of Disaster Risk Reduction, 104, 104318. https://doi.org/10.1016/J.IJDRR.2024.104318

Zhang, W., Griffies, S. M., Hallberg, R. W., Kuo, Y. H., & Wolfe, C. L. (2024). The role of surface potential vorticity in the vertical structure of mesoscale eddies in wind-driven ocean circulations. Journal of Physical Oceanography.

Silvers, L. G., Stansfield, A. M., & Reed, K. A. (2024). The impact of rotation on tropical climate, the hydrologic cycle, and climate sensitivity. Geophysical Research Letters, 51(5), e2023GL105850.

Gutiérrez-Ariza, C., Barge, L. M., Ding, Y., Cardoso, S. S., McGlynn, S. E., Nakamura, R., … Price, R. E., … & Cartwright, J. H. (2024). Magnesium silicate chimneys at the Strytan hydrothermal field, Iceland, as analogues for prebiotic chemistry at alkaline submarine hydrothermal vents on the early Earth. Progress in Earth and Planetary Science, 11(1), 1-15.

Steinke, J., Coletti, A., & Gilbert, C. (2024). # WomenInSTEM: exploring self-presentation of identity on Instagram. Journal of Science Communication, 23(1), A03.

Bargahi, M., Yazici, A., Finn, D., & Tran, C. (2024). Assessment of accessibility and equality of access in Long Island libraries from the perspective of community resilience. Case Studies on Transport Policy, 101163.

Ghanbari, M., Dell, T., Saleh, F., Chen, Z., Cherrier, J., Colle, B., … & Arabi, M. (2024). Compounding effects of changing sea level and rainfall regimes on pluvial flooding in New York City. Natural Hazards, 1-24.

Czaja Jr, R., Espinosa, E. P., Cerrato, R. M., & Allam, B. (2024). Carryover effects and feeding behavior of Atlantic surfclams in response to climate change. Journal of Experimental Marine Biology and Ecology, 573, 152002.

Leonardo, N. M., & Colle, B. A. (2024). Analysis of Snow Multi-Bands and Their Environments with High-Resolution Idealized Simulations. Monthly Weather Review.

Schwaner, C., Barbosa, M., Espinosa, E. P., & Allam, B. (2024). Probing the role of carbonic anhydrase in shell repair mechanisms in the eastern oyster Crassostrea virginica under experimental acidification stress. Journal of Experimental Marine Biology and Ecology, 572, 151990.

Willse, N., Ober, C., Chang, H. Y., Harlisa, H., Ernawati, T., Kembaren, D. D., … Chen, Y., & Kleisner, K. M. (2024). Linking crustacean life history to fishery management controls and reference points. Fisheries Management and Ecology, e12691.

Bower, E., & Reed, K. A. (2024). Using high resolution climate models to explore future changes in post-tropical cyclone precipitation. Environmental Research Letters, 19(2), 024042.

Herman, R. W., Clucas, G., Younger, J., Bates, J., Robinson, B., Reddy, S., … & Lynch, H. J. (2024). Whole genome sequencing reveals stepping‐stone dispersal buffered against founder effects in a range expanding seabird. Molecular Ecology, e17282.

Dwyer, I. P., Perger, D. A. S., Graffam, M., Aller, R. C., Wehrmann, L. M., & Volkenborn, N. (2024). Seasonality of bioirrigation by the maldanid polychaete Clymenella torquata and related oxygen dynamics in permeable sediments. Journal of Experimental Marine Biology and Ecology, 572, 151987.

Geraci-Yee, S., Collier, J. L., & Allam, B. (2024). A Microcosm Experiment Reveals the Temperature-Sensitive Release of Mucochytrium quahogii (= QPX) from Hard Clams and Pallial Fluid as a Stable QPX Reservoir. Microorganisms, 12(2), 241.

Schwaner, C., Barbosa, M., Haley, J., Espinosa, E. P., & Allam, B. (2024). Transcriptomics, proteomics, and physiological assays reveal immunosuppression in the eastern oyster Crassostrea virginica exposed to acidification stress. Fish & Shellfish Immunology, 109366.

Pochron, S. T., Sasoun, S., Maharjan, S., Pirzada, W. U., Byrne, S., Girgis, M., … & Khan, S. (2024). Toxicity of a Common Glyphosate Metabolite to the Freshwater Planarian (Girardia tigrina). Sustainability, 16(2), 842.

Oue, M., Colle, B. A., Yuter, S. E., Kollias, P., Yeh, P., & Tomkins, L. M. (2024). Microscale Updrafts Within Northeast US Coastal Snowstorms Using High-Resolution Cloud Radar Measurements. Monthly Weather Review.

Chen, H., Jang, S. G., Zhang, Y., & Liu, Y. (2024). Clean energy for all? Mapping inequity potential in the clean energy transition in the United States. Energy Research & Social Science, 108, 103400.

Lucca, B. M., & Warren, J. D. (2024). Experimental target strength measurements of pteropods and shrimp emphasize the importance of scattering model inputs. ICES Journal of Marine Science, fsad211.

Kiel, B. M., & Colle, B. A. (2024). Comparison of Clustering Approaches in a Multi-Model Ensemble for US East Coast Cold Season Extratropical Cyclones. Weather and Forecasting.

Kramer, B. J., Turk-Kubo, K., Zehr, J. P., & Gobler, C. J. (2024). Intensification of harmful cyanobacterial blooms in a eutrophic, temperate lake caused by nitrogen, temperature, and CO2. Science of The Total Environment, 169885.

Mángano, M. G., Buatois, L. A., Piñuela, L., Volkenborn, N., Rodríguez-Tovar, F. J., & García-Ramos, J. C. (2024). Jurassic paleosurfaces with fecal mounds reveal the last supper of arenicolid worms. Scientific Reports, 14(1), 709.

Atlas, R. L., Bretherton, C. S., Sokol, A. B., Blossey, P. N., & Khairoutdinov, M. F. (2024). Tropical Cirrus Are Highly Sensitive to Ice Microphysics Within a Nudged Global Storm‐Resolving Model. Geophysical Research Letters, 51(1), e2023GL105868.

Yin, J., Xue, Y., Xu, B., Ji, Y., Zhang, C., Ren, Y., & Chen, Y. (2024). Potential impacts of ocean warming on energy flow and fisheries production in an overexploited ecosystem: Implication for effective fisheries management. Ecological Indicators, 158, 111433.

Xiang, T., Bryski, E., & Farhadzadeh, A. (2024). An experimental study on wave transmission by engineered plain and enhanced oyster reefs. Ocean Engineering, 291, 116433.

Garrison, C. E., Pachiadaki, M. G., Soliman, S., Helfrich, A., & Taylor, G. T. (2023). Microbes and microplastics: Community shifts along an urban coastal contaminant gradient. Environmental Microbiology.

Li, Y., Sun, M., Yang, X., Yang, M., Kleisner, K. M., Mills, K. E., … & Chen, Y. (2024). Social–ecological vulnerability and risk of China’s marine capture fisheries to climate change. Proceedings of the National Academy of Sciences, 121(1), e2313773120.

Talwar, B. S., Brooks, E. J., Abercrombie, D. L., Anderson, B., Bond, M. E., Brooks, A. M., … Shipley, O. N., … & Heithaus, M. R. (2023). Insights into the Relative Abundance, Life History, and Ecology of Oceanic Sharks in the Eastern Bahamas. Sustainability, 16(1), 200.

Levinton, J. S. (2023). The bigger you are, the weaker you are: Multispecies evidence for the weakening combatant hypothesis. Journal of Crustacean Biology, 43(4), ruad075.

Herstoff, E. M., Meunier, C. L., Boersma, M., & Baines, S. (2023). Are all copepods the same? Variation in copepod stoichiometry with taxonomy, ontogeny, latitude, and habitat. Ecosphere, 14(12), e4705.

Chen, H., Zhang, H., Jang, S. G., Liu, X., Xing, L., Wu, Z., … & Chen, C. (2024). Road criticality assessment to improve commutes during floods. Journal of Environmental Management, 349, 119592.

Dawydiak, W., & Gobler, C. J. (2023). Transcription of biochemical defenses by the harmful brown tide pelagophyte, Aureococcus anophagefferens, in response to the protozoan grazer, Oxyrrhis marina. Frontiers in Microbiology, 14.

Wang, X., & Zhang, M. (2023). Convectively coupled Rossby–Gravity waves in a field campaign: How they are captured in reanalysis products. Atmospheric Science Letters, e1206.

Weisberg, S. J., Pershing, A. J., Grigoratou, M., Mills, K. E., Fenwick, I. F., Frisk, M. G., … & Nye, J. A. (2024). Merging trait‐based ecology and regime shift theory to anticipate community responses to warming. Global Change Biology, 30(1), e17065.

Hsu, W. C., Kooperman, G. J., Hannah, W. M., Reed, K. A., Akinsanola, A. A., & Pendergrass, A. G. (2023). Evaluating mesoscale convective systems over the US in conventional and multiscale modeling framework configurations of E3SMv1. Journal of Geophysical Research: Atmospheres, 128(23), e2023JD038740.

Zhang, D., Vogelmann, A. M., Yang, F., Luke, E., Kollias, P., Wang, Z., … & Desai, N. (2023). Evaluation of four ground-based retrievals of cloud droplet number concentration in marine stratocumulus with aircraft in situ measurements. Atmospheric Measurement Techniques, 16(23), 5827-5846.

Lee, C. S., Wang, M., Nanjappa, D., Lu, Y. T., Meliker, J., Clouston, S., … & Venkatesan, A. K. (2023). Monitoring of over-the-counter (OTC) and COVID-19 treatment drugs complement wastewater surveillance of SARS-CoV-2. Journal of Exposure Science & Environmental Epidemiology, 1-9.

Vieten, R., Warken, S. F., Winter, A., Scholz, D., Zanchettin, D., Black, D., & Lachniet, M. (2023). A sequence of abrupt climatic fluctuations in the north-eastern Caribbean related to the 8.2 ka event. The Holocene, 09596836231211874.

Huprikar, A., Stansfield, A., & Reed, K. (2023). A storyline analysis of Hurricane Irma’s precipitation under various levels of climate warming. Environmental Research Letters.

Heck, S. M., Paparo, C. J., Tinoco, A. I., Vlasak, T. J., Cahill, B. V., Milea, S. V., … & Peterson, B. J. (2024). Nonconsumptive effects of black sea bass (Centropristis striata) on a crustacean mesopredator and the indirect effects on bivalve survival. Journal of Experimental Marine Biology and Ecology, 570, 151964.

Dawydiak, W., & Gobler, C. J. Transcription of biochemical defenses by the harmful brown tide pelagophyte, Aureococcus anophagefferens, in response to the protozoan grazer, Oxyrrhis marina. Frontiers in Microbiology, 14, 1295160.

Postec, A., Galès, G., Prime, A. H., Bartoli, M., Price, R. E., Vandecasteele, C., & Erauso, G. (2023). Marinitoga aeolica sp. nov., a novel thermophilic anaerobic heterotroph isolated from a shallow hydrothermal field of Panarea Island in the Aeolian archipelago, Italy. International Journal of Systematic and Evolutionary Microbiology, 73(11), 006186.

Si, W., Liu, H., & Zhang, M. (2023). Ocean Dynamics Causes the Equatorial Pacific SST Bias in CAS‐ESM2‐0. Journal of Geophysical Research: Atmospheres, 128(22), e2023JD039593.

Ding, L., Ding, C., Tao, J., Avigliano, E., Shipley, O. N., Tang, B., … & He, D. (2023). MFishBT: A global database of biogeochemical tags in migratory fish. Ecology, e4211.

Thorne, L. H., Clay, T. A., Phillips, R. A., Silvers, L. G., & Wakefield, E. D. (2023). Effects of wind on the movement, behavior, energetics, and life history of seabirds. Marine Ecology Progress Series, 723, 73-117.

Lachlan, K. A., DiCairano, J., & Gilbert, C. (2023). Examining the Links Between Information Sufficiency, News Preferences, and Protective Behavior During Hurricane Ian. Communication Studies, 1-18.

Lamer, K., Kollias, P., Luke, E. P., Treserras, B. P., Oue, M., & Dolan, B. (2023). Multisensor agile adaptive sampling (MAAS): A methodology to collect radar observations of convective cell life cycle. Journal of Atmospheric and Oceanic Technology, 40(11), 1509-1522.

Dolan, B., Kollias, P., van den Heever, S. C., Rasmussen, K. L., Oue, M., Luke, E., … & Chandrasekar, V. (2023). Time resolved reflectivity measurements of convective clouds. Geophysical Research Letters, 50(22), e2023GL105723.

Hope, A. P., Lopez-Coto, I., Hajny, K., Tomlin, J. M., Kaeser, R., Stirm, B., … & Shepson, P. B. (2023). Analyzing “grey zone” turbulent kinetic energy predictions in the boundary layer from three WRF PBL schemes over New York City and comparison to aircraft measurements. Journal of Applied Meteorology and Climatology.

Lucca, B. M., Ressler, P. H., & Warren, J. D. (2023). Target strength measurements of individual sub-Arctic krill have frequency-dependent differences from scattering model predictions. The Journal of the Acoustical Society of America, 154(5), 3374-3387.

Pochron, S. T., Sasoun, S., Maharjan, S., Pirzada, W. U., Byrne, S. H., Girgis, M., … & Khan, S. (2023). Toxicity of AMPA to the Freshwater Planarian (Girardia tigrina).

Xie, J., & Zhang, M. (2023). Explicit representation of orographic anisotropy for all directions improves Nanling mountain rainfall simulation. Geophysical Research Letters, 50(22), e2023GL106353.

Tomlin, J. M., Lopez-Coto, I., Hajny, K. D., Pitt, J. R., Kaeser, R., Stirm, B. H., … & Shepson, P. B. (2023). Spatial attribution of aircraft mass balance experiment CO2 estimations for policy-relevant boundaries: New York City. Elementa: Science of the Anthropocene, 11(1).

Hill, D. T., Alazawi, M. A., Moran, E. J., Bennett, L. J., Bradley, I., Collins, M. B., Gobler, C.J. … & Larsen, D. A. (2023). Wastewater surveillance provides 10-days forecasting of COVID-19 hospitalizations superior to cases and test positivity: A prediction study. Infectious Disease Modelling.

Pan, X., Ye, Z., Wo, J., Xing, Q., Yang, J., Chen, Y., & Tian, Y. (2024). Interannual variability in otolith biogeochemical signatures of Japanese Spanish mackerel in the Yellow Sea. Journal of Marine Systems, 242, 103933.

Wethington, M., Gonçalves, B. C., Talis, E., Şen, B., & Lynch, H. J. Species classification of Antarctic pack‐ice seals using very high‐resolution imagery. Marine Mammal Science.

Truchon, A., Chase, E. E., Gann, E. R., Moniruzzaman, M., Creasey, B. A., Aylward, F. O. N., … Gobler, C. J. & Wilhelm, S. W. Kratosvirus quantuckense: the history and novelty of an algal bloom disrupting virus and a model for giant virus research. Frontiers in Microbiology, 14, 1284617.

Swenson Perger, D. A., Dwyer, I. P., Aller, R. C., Volkenborn, N., Heilbrun, C., & Wehrmann, L. M. Seasonal iron fluxes and iron cycling in sandy bioirrigated sediments. Frontiers in Marine Science, 10, 1293893.

Donovan, D. P., Kollias, P., Velázquez Blázquez, A., & van Zadelhoff, G. J. (2023). The generation of EarthCARE L1 test data sets using atmospheric model data sets. Atmospheric Measurement Techniques, 16(21), 5327-5356.

Karion, A., Ghosh, S., Lopez-Coto, I., Mueller, K., Gourdji, S., Pitt, J., & Whetstone, J. (2023). Methane Emissions Show Recent Decline but Strong Seasonality in Two US Northeastern Cities. Environmental Science & Technology.

Huelat, B. J. & Pochron, S. (2023). Taming the Chaos of Dementia: A Caregiver’s Guide to Interventions That Make a Difference. Rowman & Littlefield.

Huelat, B. J. & Pochron, S. (2023). Taming the Chaos of Dementia: A Caregiver’s Guide to Interventions That Make a Difference. Rowman & Littlefield.

Collier, J. L., Rest, J. S., Gallot-Lavallée, L., Lavington, E., Kuo, A., Jenkins, J., … & Archibald, J. M. (2023). The protist Aurantiochytrium has universal subtelomeric rDNAs and is a host for mirusviruses. Current Biology.

Flynn, C. M., Hart, T., Clucas, G. V., & Lynch, H. J. (2023). Penguins in the anthropause: COVID-19 closures drive gentoo penguin movement among breeding colonies. Biological Conservation, 286, 110318.

Schwaner, C., Farhat, S., Boutet, I., Tanguy, A., Barbosa, M., Grouzdev, D., Pales Espinosa, E. & Allam, B. (2023). Combination of RNAseq and RADseq to Identify Physiological and Adaptive Responses to Acidification in the Eastern Oyster (Crassostrea virginica). Marine Biotechnology, 1-23.

Adams, E. M., Gulka, J. E., Yang, Y., Burton, M. E., Burns, D. A., Buxton, V., … Fisher, N. S., … & Schoch, N. (2023). Distribution and trends of mercury in aquatic and terrestrial biota of New York, USA: a synthesis of 50 years of research and monitoring. Ecotoxicology, 1-18.

Yin, J., Xue, Y., Li, Y., Zhang, C., Xu, B., Liu, Y., … & Chen, Y. (2023). Evaluating the efficacy of fisheries management strategies in China for achieving multiple objectives under climate change. Ocean & Coastal Management, 245, 106870.

Hunt, N., Pikitch, E., Shank, B., Hodgdon, C. T., & Chen, Y. (2023). Industry and conservation goals are complementary for the most valuable fishery in the United States under climate‐driven life history changes. Conservation Letters, e12982.

Knopf, D. A., Silber, I., Riemer, N., Fridlind, A. M., & Ackerman, A. S. (2023). A 1D model for nucleation of ice from aerosol particles: An application to a mixed-phase Arctic stratus cloud layer. Journal of Advances in Modeling Earth Systems, 15, e2023MS003663. https://doi.org/10.1029/2023MS003663

Czaja Jr, R., Beal, B., Pepperman, K., Espinosa, E. P., Munroe, D., Cerrato, R., … & Allam, B. (2023). Interactive roles of temperature and food availability in predicting habitat suitability for marine invertebrates. Estuarine, Coastal and Shelf Science, 108515.

Thorne, L. H. (2023). Albatrosses orient towards infrasound while foraging. Proceedings of the National Academy of Sciences, 120(42), e2314980120.

Safina, C. (2023). Alfie & me: What owls know, what humans believe (First edition.). New York: W. W. Norton & Company.

Safina, C. (2023). Alfie & me: What owls know, what humans believe (First edition.). New York: W. W. Norton & Company.

Kang, Y., & Gobler, C. J. (2023). Nitrogen liberated via allelopathy can promote harmful algal blooms. Harmful Algae, 102490.

Tomasetti, S. J., Doall, M. H., Hallinan, B. D., Kraemer Jr, J. R., & Gobler, C. J. (2023). Oyster reefs’ control of carbonate chemistry—Implications for oyster reef restoration in estuaries subject to coastal ocean acidification. Global Change Biology.

Crawford, L. M., Gelsleichter, J., Newton, A. L., Hoopes, L. A., Lee, C. S., Fisher, N. S., … & McElroy, A. E. (2023). Associations between total mercury, trace minerals, and blood health markers in Northwest Atlantic white sharks (Carcharodon carcharias). Marine Pollution Bulletin, 195, 115533.

Pan, X., Ye, Z., Wo, J., Xing, Q., Yang, J., Chen, Y., & Tian, Y. (2023). Interannual variability in otolith biogeochemical signatures of Japanese Spanish mackerel in the Yellow Sea. Journal of Marine Systems, 103933.

Lynch, H. J. (2023). Satellite Remote Sensing for Wildlife Research in the Polar Regions. Marine Technology Society Journal, 57(3), 43-50.

Zhu, J., He, J., Ji, D., Li, Y., Zhang, H., Zhang, M., … & Jin, J. (2023). CAS-ESM2. 0 Successfully Reproduces Historical Atmospheric CO2 in a Coupled Carbon-Climate Simulation. Adv. Atmos. Sci. (2023). https://doi.org/10.1007/s00376-023-3172-9

Bottorff, B., Lew, M. M., Woo, Y., Rickly, P., Rollings, M. D., Deming, B., … Shepson, P. B. … & Stevens, P. S. (2023). OH, HO 2, and RO 2 radical chemistry in a rural forest environment: measurements, model comparisons, and evidence of a missing radical sink. Atmospheric Chemistry and Physics, 23(18), 10287-10311.

Atlas, R., Bretherton, C. S., Sokol, A. B., Blossey, P. N., & Khairoutdinov, M. (2023). Tropical anvil cirrus are highly sensitive to ice microphysics within a nudged global storm-resolving model. Authorea Preprints.

Schirmacher, I., Kollias, P., Lamer, K., Mech, M., Pfitzenmaier, L., Wendisch, M., & Crewell, S. (2023). Assessing Arctic low-level clouds and precipitation from above–a radar perspective. EGUsphere, 2023, 1-30.

Yu, Z., Tang, Y., & Gobler, C. J. (2023). Harmful Algal Blooms in China: History, recent expansion, current status, and future prospects. Harmful Algae, 102499.

Hodgdon, C., Willse, N., Hunt, N., Kim, J., Friedland, K. D., & Chen, Y. (2023). Comparing Habitat Suitability Forecasts for the Gulf of Maine and Southern New England American Lobster Stocks. Journal of Shellfish Research, 42(2), 311-324.

Shen, C., Testa, J. M., Li, M., Chen, B., & Cai, W. J. (2023). Interannual variability of air-water CO2 flux in a large eutrophic estuary. Water Research, 120523.

Welch, H., Savoca, M. S., Brodie, S., Jacox, M. G., Muhling, B. A., Clay, T. A., … Thorne, L. H., … & Hazen, E. L. (2023). Impacts of marine heatwaves on top predator distributions are variable but predictable. Nature Communications, 14(1), 5188.

Olin, J.A., Urakawa, H., Frisk, M.G., Newton, A.L., Manz, M., Fogg, M., McMullen, C., Crawford, L. and Shipley, O.N. (2023), DNA metabarcoding of cloacal swabs provides insight into diets of highly migratory sharks in the Mid-Atlantic Bight. J Fish Biol. Accepted Author Manuscript. https://doi.org/10.1111/jfb.15543

Hill, D. T., & Collins, M. B. (2023). Competition, Chromium, and Contracts: The Interaction Between Bidding Intensity and Toxic Waste Releases. Society & Natural Resources, 1-23.

Coggon, M. M., Stockwell, C. E., Claflin, M. S., Pfannerstill, E. Y., Lu, X., Gilman, J. B., … Mak, J. E., & Warneke, C. (2023). Identifying and correcting interferences to PTR-ToF-MS measurements of isoprene and other urban volatile organic compounds. EGUsphere, 2023, 1-41.

Shipley, O. N., Olin, J. A., Scott, C., Camhi, M., & Frisk, M. G. (2023). Emerging human‐shark conflicts in the New York Bight: a call for expansive science and management. Journal of Fish Biology.

Li, Y., Ma, J., Costigan, A., Yang, X., Pikitch, E. K., Chen, Y. (2023). Reconciling China’s domestic marine conservation agenda with the global 30 × 30 initiative. Marine Policy, Volume 156, 105790.

Matsui, T., Wolff, D. B., Lang, S., Mohr, K., Zhang, M., Xie, S., … & Loftus, A. M. (2023). Systematic Validation of Ensemble Cloud‐Process Simulations Using Polarimetric Radar Observations and Simulator Over the NASA Wallops Flight Facility. Journal of Geophysical Research: Atmospheres, 128(16), e2022JD038134.

Chang, H. Y., Sun, M., Rokosz, K., & Chen, Y. (2023). Evaluating effects of changing sampling protocol for a long-term ichthyoplankton monitoring program. Frontiers in Marine Science.

De Silva, D., & Gobler, C. J. Effects of the harmful alga Margalefidinium (aka Cochlodinium) polykrikoides on clearance rates of the hard clam, Mercenaria mercenaria. Frontiers in Marine Science, 10, 1252540.

Tomasetti, S. J., & Gobler, C. J. Estuarine Shellfish and Climate Change. In Climate Change and Estuaries (pp. 451-474). CRC Press.

Czaja Jr, R., Pales-Espinosa, E., Cerrato, R. M., Lwiza, K., & Allam, B. (2023). Using meta-analysis to explore the roles of global upwelling exposure and experimental design in bivalve responses to low pH. Science of The Total Environment, 902, 165900.

Cerrato, R.M., M. Sclafani. 2023. Reef Benthic Fauna and Sediment Characterization. Marine Sciences Research Center Special Report No. 142, Stony Brook University, Stony Brook, NY, 90 pp.

Lato, K. A., Fuirst, M., Veit, R. R., & Thorne, L. H. (2023). Peri‐urban systems alter trophic niche size and overlap in sympatric coastal bird species. Ecosphere, 14(8), e4643.

Zhu, Z., Kollias, P., & Yang, F. (2023). Particle inertial effects on radar Doppler spectra simulation. Atmospheric Measurement Techniques, 16(15), 3727-3737.

Brianik, C. J., Bouallegui, Y., & Allam, B. (2023). Triploid animals, a potential model for ETosis research: Influence of polyploidy on the formation and efficacy of extracellular traps in the eastern oyster. Fish & Shellfish Immunology, 108992.

Sobel, A. H., Lee, C. Y., Bowen, S. G., Camargo, S. J., Cane, M. A., Clement, A., … Reed, K. A. … & Tippett, M. K. (2023). Near-term tropical cyclone risk and coupled Earth system model biases. Proceedings of the National Academy of Sciences, 120(33), e2209631120.

Shipley, O. N., McMeans, B. C., Besser, A. C., Bloomfield, E. J., & Newsome, S. D. Energy channelling, food chain length and body condition in a northern lake predator. Freshwater Biology.

Hill, D., Dunham, C., Larsen, D. A., & Collins, M. (2023). Operationalizing an open-source dashboard for communicating results of wastewater-based surveillance. MethodsX, 102299.

Tovar, C., Hudson, L., Cuesta, F., Meneses, R. I., Muriel, P., Hidalgo, O., … Yager, K., & Viruel, J. (2023). Strategies of diaspore dispersal investment in Compositae: the case of the Andean highlands. Annals of Botany, mcad099.

van de Lindt, J. W., Kruse, J., Cox, D. T., Gardoni, P., Lee, J. S., Padgett, J., … & Hamideh, S. (2023). The interdependent networked community resilience modeling environment (IN-CORE). Resilient Cities and Structures, 2(2), 57-66.

Barosa, B., Ferrillo, A., Selci, M., Giardina, M., Bastianoni, A., Correggia, M., … Price, R., … & Giovannelli, D. Mapping the microbial diversity associated with different geochemical regimes in the shallow-water hydrothermal vents of the Aeolian Archipelago, Italy. Frontiers in Microbiology, 14, 1134114.

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Kang, Y., Harke, M. J., Berry, D. L., Collier, J. L., Wilhelm, S. W., Dyhrman, S. T., & Gobler, C. J. (2021). Transcriptomic Responses of Four Pelagophytes to Nutrient (N, P) and Light Stress. Frontiers in Marine Science, 8, 223.

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Sogut, E., & Farhadzadeh, A. (2021). Numerical Study of Longshore Variation in Beach Morphodynamics along Eastern Lake Erie Shoreline due to Seiche. Journal of Coastal Research, 37(1), 92-103.

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Gobler, C. J., & Tang, Y. Z. Laboratory Culture-Based Characterization of the Resting Stage Cells of the Brown-Tide-Causing Pelagophyte, Aureococcus anophagefferens. Journal of Marine Science and Engineering, 8(12), 1027. doi:http://dx.doi.org/10.3390/jmse8121027

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Jones, J. P., Firdosy, S. A., Barge, L. M., Bescup, J. C., Perl, S. M., Zhang, X., … & Price, R. E. (2020). 3D Printed Minerals as Astrobiology Analogs of Hydrothermal Vent Chimneys. Astrobiology.

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Lin, S., Hu, Z., Deng, Y., Shang, L., Gobler, C. J., & Tang, Y. Z. (2020). An assessment on the intrapopulational and intraindividual genetic diversity in LSU rDNA in the harmful algal blooms-forming dinoflagellate Margalefidinium (= Cochlodinium) fulvescens based on clonal cultures and bloom samples from Jiaozhou Bay, China. Harmful Algae, 96, 101821.

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Graffam, M., Polerecky, L., & Volkenborn, N. (2020). Hydrobiogeochemical Function of Soil Based Onsite Wastewater Treatment Systems: Insights from High-Resolution O 2 Imaging. Journal of Sustainable Water in the Built Environment, 6(2), 04020005.

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Frisk, M. G., Ingram, M. C., & Dunton, K. (2019). Monitoring Endangered Atlantic Sturgeon and Commercial Finfish Habitat Use in the New York Lease Area. Stony Brook (NY): US Department of the Interior, Bureau of Ocean Energy Management. OCS Study BOEM, 74, 88.

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Ingram, E. C., Cerrato, R. M., Dunton, K. J., & Frisk, M. G. (2019). Endangered Atlantic Sturgeon in the New York Wind Energy Area: implications of future development in an offshore wind energy site. Scientific reports, 9(1), 1-13.

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Drueke, S., Kirshbaum, D. J., & Kollias, P. Evaluation of Shallow‐Cumulus Entrainment Rate Retrievals Using Large‐Eddy Simulation. Journal of Geophysical Research: Atmospheres.

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Kim, H., Janiga, M. A., & Pegion, K. (2019). MJO Propagation Processes and Mean Biases in the SubX and S2S Reforecasts. Journal of Geophysical Research: Atmospheres.

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Laskin, A., Moffet, R. C., Fraund, M., Wang, J., Gilles, M. K., Knopf, D., & China, S. (2019). Chemical Imaging of Atmospheric Organic Particles in the Southern Great Plains Field Campaign Report (No. DOE/SC-ARM-19-018). DOE Office of Science Atmospheric Radiation Measurement (ARM) Program (United States).

Finn, D., Chandrasekhar, D., & Xiao, Y. (2019). A Region Recovers: Planning for Resilience after Superstorm Sandy. Journal of Planning Education and Research, 0739456X19864145.

Frossard, A. A., Gérard, V., Duplessis, P., Kinsey, J. D., Lu, X., Zhu, Y., … & Beaupré, S. R. (2019). Properties of Seawater Surfactants Associated with Primary Marine Aerosol Particles Produced by Bursting Bubbles at a Model Air–Sea Interface. Environmental science & technology.

Goldsmith, K. A., Lau, S., Poach, M. E., Sakowicz, G. P., Trice, T. M., Ono, C. R., Nye, J.A. … & Saba, G. K. (2019). Scientific considerations for acidification monitoring in the US Mid-Atlantic Region. Estuarine, Coastal and Shelf Science.

Aller, R. C., Aller, J. Y., Zhu, Q., Heilbrun, C., Klingensmith, I., & Kaushik, A. (2019). Worm tubes as conduits for the electrogenic microbial grid in marine sediments. Science Advances, 5(7), eaaw3651.

McDowall, P., & Lynch, H. J. (2019). When the “selfish herd” becomes the “frozen herd”: spatial dynamics and population persistence in a colonial seabird. Ecology.

Jimenez, M. Y., Ivany, L. C., Judd, E. J., & Henkes, G. (2019). Low and seasonally variable salinity in the Pennsylvanian equatorial Appalachian Basin. Earth and Planetary Science Letters, 519, 182-191.

Chavas, D. R., & Reed, K. A. (2019). Dynamical aquaplanet experiments with uniform thermal forcing: system dynamics and implications for tropical cyclone genesis and size. Journal of the Atmospheric Sciences, (2019).

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Wang, S., McNamara, S. M., Moore, C. W., Obrist, D., Steffen, A., Shepson, P. B., … & Pratt, K. A. (2019). Direct detection of atmospheric atomic bromine leading to mercury and ozone depletion. Proceedings of the National Academy of Sciences, 116(29), 14479-14484.

Lucca, B. M., & Warren, J. D. (2019). Fishery-independent observations of Atlantic menhaden abundance in the coastal waters south of New York. Fisheries Research, 218, 229-236.

Hajny, K., Salmon, O. E., Rudek, J., Lyon, D. R., Stuff, A. A., Stirm, B. H., … & Shepson, P. B. (2019). Observations of Methane Emissions from Natural Gas-Fired Power Plants. Environmental Science & Technology.

Pinardi, N., Cessi, P., Borile, F., & Wolfe, C. L. (2019). The Mediterranean Sea Overturning Circulation. Journal of Physical Oceanography, 49(7), 1699-1721.

Battaglia, A., & Kollias, P. (2019). Evaluation of differential absorption radars in the 183 GHz band for profiling water vapour in ice clouds. Atmospheric Measurement Techniques, 12(6), 3335-3349.

Yang, F., McGraw, R., Luke, E. P., Zhang, D., Kollias, P., & Vogelmann, A. M. (2019). A new approach to estimate supersaturation fluctuations in stratocumulus cloud using ground-based remote sensing measurements (No. BNL-212252-2019-JAAM). Brookhaven National Lab.(BNL), Upton, NY (United States).

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Chandrasekhar, D., Xiao, Y., Rothfeder, R. and Finn, D. (2018). What drives household recovery after disasters? A case study of New York City after 2012 Hurricane Sandy. Journal of Environmental Planning and Management. https://doi.org/10.1080/09640568.2018.1492907

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Xiao, Y., Wu, K., Finn, D. and Chandrasekar, D. (2018) “Community Businesses as Social Units in Post-Disaster Recovery,” Journal of Planning Education and Research. https://doi.org/10.1177/0739456X18804328

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Röhr, M. E., Holmer, M., Baum, J. K., Björk, M., Chin, D., Chalifour, L., Peterson, B., … & Duffy, J. E. Blue carbon storage capacity of temperate eelgrass (Zostera marina) meadows. Global Biogeochemical Cycles.

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Rossby, T., Flagg, C., Chafik, L., Harden, B., & Søiland, H. (2018). A Direct Estimate of Volume, Heat, and Freshwater Exchange Across the Greenland‐Iceland‐Faroe‐Scotland Ridge. Journal of Geophysical Research: Oceans.

Griffith, A. W., Shumway, S. E., & Gobler, C. J. (2018). Differential Mortality of North Atlantic Bivalve Molluscs During Harmful Algal Blooms Caused by the Dinoflagellate, Margalefidinium polykrikoides. Estuaries and Coasts, 1-14.

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Gownaris, N. J., Rountos, K. J., Kaufman, L., Kolding, J., Lwiza, K. M. M., & Pikitch, E. K. (2018). Water level fluctuations and the ecosystem functioning of lakes. Journal of Great Lakes Research.

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Zheng, C., Kar-Man Chang, E., Kim, H. M., Zhang, M., & Wang, W. (2018). Impacts of the Madden–Julian Oscillation on Storm-Track Activity, Surface Air Temperature, and Precipitation over North America. Journal of Climate, 31(15), 6113-6134.

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Chang, E. K. M. (2018). CMIP5 Projected Change in Northern Hemisphere Winter Cyclones with Associated Extreme Winds. Journal of Climate, (2018).

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Foley, C. M., Hart, T., & Lynch, H. J. (2018). King Penguin populations increase on South Georgia but explanations remain elusive. Polar Biology, 41(6), 1111-1122.

Chen, Y.S., Verlinde, J., Clothiaux, E.E., Ackerman, A.S., Fridlind, A.M., Chamecki, M., Kollias, P., Kirkpatrick, M.P., Chen, B.C., Yu, G. and Avramov, A., (2018). On the forward modeling of radar Doppler spectrum width from LES: Implications for model evaluation. Journal of Geophysical Research: Atmospheres.

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Pikitch, E. K. (2018). A tool for finding rare marine species. Science, 360(6394), 1180 LP-1182. 

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Landman, N. H., Cochran, J. K., Slovacek, M., Larson, N. L., Garb, M. P., Brezina, J., & Witts, J. D. (2018). Isotope sclerochronology of ammonites (Baculites Compressus) from methane seep and non-seep sites in the Late Cretaceous Western Interior Seaway, USA: Implications for ammonite habitat and mode of life. American Journal of Science, 318(6), 603-639.

Tonjes, D. J., McElroy, A. E., Barnes-Pohjonen, R. K., Ninivaggi, D. V., Dawydiak, W., Greene, G. T., & Brownawell, B. J. (2018). Fate of methoprene in temperate salt marsh ditches following aerial applications. The Science of the total environment, 642, 394.

Madigan, D. J., Snodgrass, O. E., & Fisher, N. S. (2018). From migrants to mossbacks: tracer-and tag-inferred habitat shifts in the California yellowtail Seriola dorsalis. Marine Ecology Progress Series, 597, 221-230.

Madigan, D. J., Snodgrass, O. E., & Fisher, N. S. (2018). From migrants to mossbacks: tracer-and tag-inferred habitat shifts in the California yellowtail Seriola dorsalis. Marine Ecology Progress Series, 597, 221-230.

Finn, D. and Marshall, J.T. (2018) “Superstorm Sandy at Five: Lessons on Law as Catalyst and Obstacle to Long-Term Recovery Following Catastrophic Disasters.” Environmental Law Reporter News and Analysis. Vol 48. June, 2018. 10494-10519.

Cembella, A. D., Tillmann, U., Gobler, C. J., Morton, S. L., Tomas, C. R., Burkholder, J. M., … & Band‐Schmidt, C. J. (2018). Harmful Algal Species Fact Sheets. Harmful Algal Blooms: A Compendium Desk Reference, 561-638.

Lauritzen, P. H., Nair, R. D., Herrington, A. R., Callaghan, P., Goldhaber, S., Dennis, J. M., Reed, K.A., … & Ullrich, P. A. (2018). NCAR Release of CAM‐SE in CESM2. 0: A Reformulation of the Spectral Element Dynamical Core in Dry‐Mass Vertical Coordinates With Comprehensive Treatment of Condensates and Energy. Journal of Advances in Modeling Earth Systems, 10(7), 1537-1570.

Wirth, C., & Warren, J. D. Overlapping use of an artificial reef by humans and an apex predator (Tursiops truncatus) in the New York Bight. Marine Mammal Science.

Yang, F., Kollias, P., Shaw, R. A., & Vogelmann, A. M. (2018). Cloud droplet size distribution broadening during diffusional growth: ripening amplified by deactivation and reactivation. Atmospheric Chemistry and Physics, 18(10), 7313-7328.

Liu, P. (2018). MJO evolution and predictability disclosed by the RMM variant with balanced MJO variance in convection and zonal winds. Climate Dynamics, 1-15.

Kramer, B. J., Davis, T. W., Meyer, K. A., Rosen, B. H., Goleski, J. A., Dick, G. J., … & Gobler, C. J. (2018). Nitrogen limitation, toxin synthesis potential, and toxicity of cyanobacterial populations in Lake Okeechobee and the St. Lucie River Estuary, Florida, during the 2016 state of emergency event. PloS one, 13(5), e0196278.

Landman, N. H., Jicha, B. R., Cochran, J. K., Garb, M. P., Brophy, S. K., Larson, N. L., & Brezina, J. (2018). 40Ar/39Ar date of a bentonite associated with a methane seep deposit in the upper Campanian Baculites compressus Zone, Pierre Shale, South Dakota. Cretaceous Research.

Erickson, M. J., Colle, B. A., & Charney, J. J. (2018). Evaluation and Postprocessing of Ensemble Fire Weather Predictions over the Northeast United States. Journal of Applied Meteorology and Climatology, 57(5), 1135-1153.

Hardisty, D. S., Lyons, T. W., Riedinger, N., Isson, T. T., Owens, J. D., Aller, R. C., … & Masterson, A. L. (2018). An evaluation of sedimentary molybdenum and iron as proxies for pore fluid paleoredox conditions. American Journal of Science, 318(5), 527-556.

Schwaller, M. R., Lynch, H. J., Tarroux, A., & Prehn, B. (2018). A continent-wide search for Antarctic petrel breeding sites with satellite remote sensing. Remote Sensing of Environment, 210, 444-451.

Madigan, D.J., Li, M., Yin, R., Baumann, H., Snodgrass, O.E., Dewar, H., Krabbenhoft, D.P., Baumann, Z., Fisher, N.S., Balcom, P.H. and Sunderland, E.M., (2018). Mercury stable isotopes reveal influence of foraging depth on mercury concentrations and growth in Pacific bluefin tuna. Environmental science & technology.

Ray, R., Michaud, E., Aller, R. C., Vantrepotte, V., Gleixner, G., Walcker, R., … & Thouzeau, G. The sources and distribution of carbon (DOC, POC, DIC) in a mangrove dominated estuary (French Guiana, South America). Biogeochemistry, 1-25.

Youngflesh, C., Jenouvrier, S., Hinke, J. T., DuBois, L., St Leger, J., Trivelpiece, W. Z., … & Lynch, H. J. (2017). Rethinking ‘normal’: The role of stochasticity in the phenology of a synchronously breeding seabird. Journal of Animal Ecology.

Berdalet, E., Kudela, R., Banas, N. S., Bresnan, E., Burford, M. A., Davidson, K., Gobler, C.J. … & Montresor, M. (2018). GlobalHAB: fostering international coordination on harmful algal bloom research in aquatic systems. Global ecology and oceanography of harmful algal blooms. Springer, Cham, 425-447.

Blanton, B., Dresback, K., Colle, B., Kolar, R., Vergara, H., Hong, Y., … & Wachtendorf, T. (2018). An Integrated Scenario Ensemble-Based Framework for Hurricane Evacuation Modeling: Part 2-Hazard Modeling. Risk analysis: an official publication of the Society for Risk Analysis.

Arora, K., Goff, J. A., Wood, L. J., Flood, R. D., & Christensen, B. (2018). Analysis of hummocky bedforms offshore Fire Island, New York, generated by superstorm Sandy. Continental Shelf Research.

Hornstein, J., Espinosa, E. P., Cerrato, R. M., Lwiza, K. M., & Allam, B. (2018). The influence of temperature stress on the physiology of the Atlantic surfclam, Spisula solidissima. Comparative Biochemistry and Physiology Part A: Molecular & Integrative Physiology.

Wang, J., Kim, H. M., Chang, E. K., & Son, S. W. Modulation of the MJO and North Pacific Storm Track Relationship by the QBO. Journal of Geophysical Research: Atmospheres.

Yang, F., Luke, E. P., Kollias, P., Kostinski, A. B., & Vogelmann, A. M. (2018). Scaling of drizzle virga depth with cloud thickness for marine stratocumulus clouds. Geophysical Research Letters.

Farhadzadeh, A., Arabi, M. G., & Bokuniewicz, H. (2018). Contribution of seiche to beach profile evolution in eastern Lake Erie. Shore & Beach, 86(2), 19.

Grosvenor, D. P., Sourdeval, O., Zuidema, P., Ackerman, A., Alexandrov, M. D., Bennartz, R., Kollias, P., et al. (2018). Remote sensing of droplet number concentration in warm clouds: A review of the current state of knowledge and perspectives. Reviews of Geophysics, 56, 409–453.

Chia, M. A., Jankowiak, J. G., Kramer, B. J., Goleski, J. A., Huang, I. S., Zimba, P. V., … & Gobler, C. J. (2018). Succession and toxicity of Microcystis and Anabaena (Dolichospermum) blooms are controlled by nutrient-dependent allelopathic interactions. Harmful Algae, 74, 67-77.

Liu, S., Goff, J. A., Flood, R. D., Christensen, B., & Austin Jr, J. A. (2018). Sorted bedforms off Western Long Island, New York, USA: Asymmetrical morphology and twelve‐year migration record. Sedimentology.

Zhu, J., Zeng, X., Zhang, M., Dai, Y., Ji, D., Li, F., … & Song, X. (2018). Evaluation of the New Dynamic Global Vegetation Model in CAS-ESM. Advances in Atmospheric Sciences, 35(6), 659-670.

Ramesh, K., Melzner, F., Griffith, A. W., Gobler, C. J., Rouger, C., Tasdemir, D., & Nehrke, G. (2018). In vivo characterization of bivalve larval shells: a confocal Raman microscopy study. Journal of The Royal Society Interface, 15(141), 20170723.

Lau, Y. T., Gambino, L., Santos, B., Espinosa, E. P., & Allam, B. (2018). Regulation of oyster (Crassostrea virginica) hemocyte motility by the intracellular parasite Perkinsus marinus: A possible mechanism for host infection. Fish & shellfish immunology, 78, 18-25.

Yu, H., & Zhang, M. (2018). Explaining the Year‐to‐Year Variability of the Eastern Pacific Intertropical Convergence Zone in the Boreal Spring. Journal of Geophysical Research: Atmospheres, 123(8), 3847-3856.

Yu, H., & Zhang, M. (2018). Explaining the Year‐to‐Year Variability of the Eastern Pacific Inter‐Tropical Convergence Zone (ITCZ) in the Boreal Spring. Journal of Geophysical Research: Atmospheres.

O’Leary, B. C., Ban, N. C., Fernandez, M., Friedlander, A. M., García-Borboroglu, P., Golbuu, Y., … Pikitch, E.K. & McCauley, D. J. (2018). Addressing Criticisms of Large-Scale Marine Protected Areas. BioScience.

Wirth, V., Riemer, M., Chang, E. K., & Martius, O. (2018). Rossby Wave Packets on the Midlatitude Waveguide—A Review. Monthly Weather Review, (2018).

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Hartman, R., Espinosa, E. P., & Allam, B. (2018). Identification of clam plasma proteins that bind its pathogen Quahog Parasite Unknown. Fish & Shellfish Immunology, 77, 214-221.

Davidson, R. A., Nozick, L. K., Wachtendorf, T., Blanton, B., Colle, B., Kolar, R. L., … & Leonardo, N. (2018). An Integrated Scenario Ensemble‐Based Framework for Hurricane Evacuation Modeling: Part 1—Decision Support System. Risk analysis.

Zhang, D., Wang, Z., Kollias, P., Vogelmann, A. M., Yang, K., & Luo, T. (2018). Ice particle production in mid-level stratiform mixed-phase clouds observed with collocated A-Train measurements. Atmospheric Chemistry and Physics, 18(6), 4317-4327.

Wang, W., Lee, C., & Primeau, F. (2018). Inferring particle dynamics in the Mediterranean Sea from in-situ pump POC and chloropigment data using Bayesian statistics. Biogeosci. Discuss.

Erickson, M. J., Colle, B. A., & Charney, J. J. (2018). Evaluation and Post-Processing of Ensemble Fire Weather Predictions over the Northeast United States. Journal of Applied Meteorology and Climatology, (2018).

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Gobler, C. J., Merlo, L. R., Morrell, B. K., & Griffith, A. W. (2018). Temperature, Acidification, and Food Supply Interact to Negatively Affect the Growth and Survival of the Forage Fish, Menidia beryllina (Inland Silverside), and Cyprinodon variegatus (Sheepshead Minnow). Frontiers in Marine Science, 5, 86.

Urmy, S. S., & Warren, J. D. (2018). Foraging hotspots of common and roseate terns: the influence of tidal currents, bathymetry, and prey density. Marine Ecology Progress Series, 590, 227-245.

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Wang, J., Kim, H.-M. & Chang, E. K. M. (2018). Interannual Modulation of Northern Hemisphere Winter Storm Tracks by the QBO. Geophysical Research Letters, 45. https://doi.org/10.1002/2017GL076929

Lau, Y. T., Gambino, L., Santos, B., Espinosa, E. P., & Allam, B. (2018). Transepithelial migration of mucosal hemocytes in Crassostrea virginica and potential role in Perkinsus marinus pathogenesis. Journal of invertebrate pathology, 153, 122-129.

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Oue, M., Kollias, P., Ryzhkov, A., & Luke, E. P. (2018). Toward Exploring the Synergy Between Cloud Radar Polarimetry and Doppler Spectral Analysis in Deep Cold Precipitating Systems in the Arctic. Journal of Geophysical Research: Atmospheres.

Gobler, C. J., Merlo, L. R., Morell, B. K., & Griffith, A. W. (2018). Temperature, acidification, and food supply interact to negatively affect the growth and survival of the forage fish, Menidia beryllina (inland silverside) and Cyprinodon variegatus (sheepshead minnow). Frontiers in Marine Science, 5, 86.

Wehner, M. F., Reed, K. A., Loring, B., Stone, D., & Krishnan, H. (2018). Changes in tropical cyclones under stabilized 1.5 and 2.0° C global warming scenarios as simulated by the Community Atmospheric Model under the HAPPI protocols. Earth System Dynamics, 9(1), 187.

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Dvarskas, A. (2018). Mapping ecosystem services supply chains for coastal Long Island communities: Implications for resilience planning. Ecosystem Services, 30, 14-26.

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Alexander, M. A., Scott, J. D., Friedland, K. D., Mills, K. E., Nye, J. A., Pershing, A. J., & Thomas, A. C. (2018). Projected sea surface temperatures over the 21st century: Changes in the mean, variability and extremes for large marine ecosystem regions of Northern Oceans. Elem Sci Anth, 6(1), 9. DOI: http://doi.org/10.1525/elementa.191

Dasgupta, S., Choyke, S., Ferguson, P. L., & McElroy, A. E. (2018). Antioxidant responses and oxidative stress in sheepshead minnow larvae exposed to Corexit 9500® or its component surfactant, DOSS. Aquatic Toxicology, 194, 10-17.

Zhang, Y., Xie, S., Klein, S. A., Marchand, R., Kollias, P., Clothiaux, E. E., … & Tang, S. (2018). The ARM Cloud Radar Simulator for Global Climate Models: A New Tool for Bridging Field Data and Climate Models. Bulletin of the American Meteorological Society, (2017).

Knopf, D. A., Alpert, P. A., Wang, B., The Role of Organic Aerosol in Atmospheric Ice Nucleation: A Review. ACS Earth Space Chem., Article ASAP DOI: 10.1021/acsearthspacechem.7b00120.

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Flanagan, A. M., Flood, R. D., Frisk, M. G., Garza, C. D., Lopez, G. R., Maher, N. P. & Cerrato, R. M. (2018). The relationship between observational scale and explained variance in benthic communities. PLoS ONE, 13(1), e0189313.

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Rémillard, J., Fridlind, A. M., Ackerman, A. S., Tselioudis, G., Kollias, P., Mechem, D. B., … & Chuang, P. Y. (2017). Use of cloud radar Doppler spectra to evaluate stratocumulus drizzle size distributions in large-eddy simulations with size-resolved microphysics. Journal of Applied Meteorology and Climatology, 56(12), 3263-3283.

Chen, J., Liu, Y., Zhang, M., & Peng, Y. (2017). Height Dependency of Aerosol‐Cloud Interaction Regimes. Journal of Geophysical Research: Atmospheres.

Snelgrove, P.V., Soetaert, K., Solan, M., Thrush, S., Wei, C.L., Danovaro, R., Fulweiler, R.W., Kitazato, H., Ingole, B., Norkko, A., Parkes, R.J. and Volkenborn, N., (2017). Global Carbon Cycling on a Heterogeneous Seafloor. Trends in ecology & evolution.

Suter EA, Pachiadaki MG, Taylor GT, Astor Y, Edgcomb VP. (2017) Free-living chemoautotrophic and particle-attached heterotrophic prokaryotes dominate microbial assemblages along a pelagic marine redox gradient. Environ Microbiol, doi:10.1111/1462-2920.13997.

Thorne, L. H., Foley, H. J., Baird, R. W., Webster, D. L., Swaim, Z. T., & Read, A. J. (2017). Movement and foraging behavior of short-finned pilot whales in the Mid-Atlantic Bight: importance of bathymetric features and implications for management. Marine Ecology Progress Series, 584, 245-257.

Berdalet, E., R. Kudela, E. Urban, H. Enevoldsen, N.S. Banas, E. Bresnan, M. Burford, K. Davidson, C.J. Gobler, B. Karlson, P.T. Lim, L. Mackenzie, M. Montresor, V.L. Trainer, G. Usup, and K. Yin. 2017. GlobalHAB: A new program to promote international research, observations, and modeling of harmful algal blooms in aquatic systems. Oceanography 30(1):70–81, https://doi.org/10.5670/oceanog.2017.111.

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Baumann, H., & Nye, J. (2017). Survival, length, and growth responses of M. menidia offspring from different females exposed to contrasting CO2 environments.

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Korfe, N. G., & Colle, B. A. (2017). Evaluation of Cool-Season Extratropical Cyclones in a Multi-Model Ensemble for Eastern North America and the Western Atlantic Ocean. Weather and Forecasting, (2017).

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GOBLER, C. J. (2017). PDD BASED ON THE FINAL ENVIRONMENTAL IMPACT STATEMENT.

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Zarnoch, C. B., Hoellein, T. J., Furman, B. T., & Peterson, B. J. (2017). Eelgrass meadows, Zostera marina (L.), facilitate the ecosystem service of nitrogen removal during simulated nutrient pulses in Shinnecock Bay, New York, USA. Marine Pollution Bulletin, 124(1), 376-387.

Gobler, C. J., Hattenrath-Lehmann, T. K., Doherty, O. M., Griffith, A. W., Kang, Y., & Litaker, R. W. (2017). Reply to Dees et al.: Ocean warming promotes species-specific increases in the cellular growth rates of harmful algal blooms. Proceedings of the National Academy of Sciences, 201715749.

Fratantoni, D. M., O’Brien, J. K., Flagg, C., & Rossby, T. (2017). AXIS–an Autonomous eXpendable Instrument System. Journal of Atmospheric and Oceanic Technology, (2017).

Fryer, P., Wheat, G., Williams, T., and the Expedition 366 Scientists, 2017. Expedition 366 Preliminary Report: Mariana Convergent Margin and South Chamorro Seamount. International Ocean Discovery Program. https://doi.org/10.14379/iodp.pr.366.2017

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Küchler, N., Kneifel, S., Löhnert, U., Kollias, P., Czekala, H., & Rose, T. (2017). A W-Band Radar–Radiometer System for Accurate and Continuous Monitoring of Clouds and Precipitation. Journal of Atmospheric and Oceanic Technology, 34(11), 2375-2392.

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Xu, H., Miller, T. J., Hameed, S., Alade, L. A., & Nye, J. A. Evaluating the utility of the Gulf Stream Index for predicting recruitment of Southern New England‐Mid Atlantic yellowtail flounder. Fisheries Oceanography. DOI: 10.1111/fog.12236

Zhou, Y., & Kim, H. M. (2017). Prediction of atmospheric rivers over the North Pacific and its connection to ENSO in the North American multi-model ensemble (NMME). Climate Dynamics, 1-15.

Xu, N., Wang, M., Tang, Y., Zhang, Q., Duan, S., & Gobler, C. J. (2017). Acute toxicity of the cosmopolitan bloom-forming dinoflagellate Akashiwo sanguinea to finfish, shellfish, and zooplankton. Aquatic Microbial Ecology, 80(3), 209-222.

Astor, Y.M., Lorenzoni, L., Guzman, L., Fuentes, G., Muller-Karger, F., Varela, R., Scranton, M., Taylor, G.T. and Thunell, R., 2017. Distribution and variability of the dissolved inorganic carbon system in the Cariaco Basin, Venezuela. Marine Chemistry, 195, 15-26.

Price, R.E., Boyd, E., Hoehler, T.M., Wehrmann, L.M., Bogason, E., Valtýsson, H., Örlygsson, J., Gautason, B., Amend, J., 2017. Alkaline vents and steep Na+ gradients from ridge-flank basalts—Implications for the origin and evolution of life. Geology, v. 45 (12).

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Zhang, Y., Klein, S. A., Fan, J., Chandra, A. S., Kollias, P., Xie, S., & Tang, S. (2017). Large-eddy simulation of shallow cumulus over land: A composite case based on ARM long-term observations at its Southern Great Plains site. Journal of the Atmospheric Sciences, (2017).

Kang, Y., & Gobler, C. J. (2017). The brown tide algae, Aureococcus anophagefferens and Aureoumbra lagunensis (Pelagophyceae), allelopathically inhibit the growth of competing microalgae during harmful algal blooms. Limnology and Oceanography.

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Thickman, J. D., & Gobler, C. J. (2017). The ability of algal organic matter and surface runoff to promote the abundance of pathogenic and non-pathogenic strains of Vibrio parahaemolyticus in Long Island Sound, USA. PloS one, 12(10), e0185994.

Bowman, M. J., Yaro, R., & Golden, W. B. Regional Storm Surge Planning for Metro New York/New Jersey. In International Conference on Sustainable Infrastructure 2017 (pp. 336-347).

Liu, P., Zhu, Y., Zhang, Q., Gottschalck, J., Zhang, M., Melhauser, C., Li, W., Guan, H., Zhou, X., Hou, D. and Peña, M., (2017). Climatology of tracked persistent maxima of 500-hPa geopotential height. Climate Dynamics, pp.1-17.

Ling, J., Kegelmeyer, W. P., Aditya, K., Kolla, H., Reed, K. A., Shead, T. M., & Davis, W. L. (2017, October). Using feature importance metrics to detect events of interest in scientific computing applications. In 2017 IEEE 7th Symposium on Large Data Analysis and Visualization (LDAV) (pp. 55-63). IEEE.

Leonardo, N. M., & Colle, B. A. (2017). Verification of Multimodel Ensemble Forecasts of North Atlantic Tropical Cyclones. Weather and Forecasting, 32(6), 2083-2101.

Lee, C. S., & Fisher, N. S. (2017). Bioaccumulation of methylmercury in a marine diatom and the influence of dissolved organic matter. Marine Chemistry.

Dasgupta, S., & McElroy, A. E. (2017). Cytotoxicity and CYP1A inhibition in rainbow trout liver (RTL-W1) cell lines exposed to dispersant Corexit 9500 and its major surfactant components. Toxicology in Vitro, 44, 377-381.

Tinoco, A. I., Furman, B. T., Darnell, K. M., & Peterson, B. J. (2017). Submerged aquatic vegetation, topography and flow characteristics in the upper, tidal Hudson River: Progress toward a predictive habitat model. Aquatic Botany, 142, 53-60.

Fan, S., Knopf, D. A., Heymsfield, A. J., & Donner, L. J. (2017). Modeling of aircraft measurements of ice crystal concentration in the Arctic and a parameterization for mixed-phase cloud. Journal of the Atmospheric Sciences, (2017).

Rahman, S., Aller, R. C., & Cochran, J. K. (2017). The missing silica sink: revisiting the marine sedimentary Si cycle using cosmogenic 32Si. Global Biogeochemical Cycles, 31, 1559-1578.

Lynch, H. J., Foley, C. M., Lynch, M. A., & Thorne, L. H. (2017). Response to Van Norman. BioScience, bix109.

Shipley, O.N., Murchie, K.J., Frisk, M.G., Brooks, E.J., Shea, O.R.O., & Power M. (2017). Low lipid and urea effects and inter-tissue comparisons of stable isotope signatures in three nearshore elasmobranchs. Marine Ecology Progress Series, 579, 233-238.

Kim, H. M., & Kim, B. M. (2017). Relative Contributions of Atmospheric Energy Transport and Sea Ice Loss to the Recent Warm Arctic Winter. Journal of Climate, 30(18), 7441-7450.

Griffith, A. W., & Gobler, C. J. (2017). Transgenerational exposure of North Atlantic bivalves to ocean acidification renders offspring more vulnerable to low pH and additional stressors. Scientific Reports, 7.

Tamborski, J. J., Cochran, J. K., & Bokuniewicz, H. J. (2017). Submarine groundwater discharge driven nitrogen fluxes to Long Island Sound, NY: Terrestrial vs. marine sources. Geochimica et Cosmochimica Acta, 218, 40-57.

Fan, J., Han, B., Varble, A., Morrison, H., North, K., Kollias, P., … & Lin, Y. (2017). Cloud‐resolving model intercomparison of an MC3E squall line case: Part I—Convective updrafts. Journal of Geophysical Research: Atmospheres, 122(17), 9351-9378.

Zhou, X., & Khairoutdinov, M. F. (2017). Changes in Temperature and Precipitation Extremes in Super-parameterized CAM in Response to Warmer SSTs. Journal of Climate, (2017).

North, K. W., Oue, M., Kollias, P., Giangrande, S. E., Collis, S. M., & Potvin, C. K. (2017). Vertical air motion retrievals in deep convective clouds using the ARM scanning radar network in Oklahoma during MC3E. Atmospheric Measurement Techniques, 10(8), 2785.

Hu, Z., Wang, D. P., He, X., Li, M., Wei, J., Pan, D., & Bai, Y. (2017). Episodic surface intrusions in the Yellow Sea during relaxation of northerly winds. Journal of Geophysical Research: Oceans.

Thomas, A. C., Pershing, A. J., Friedland, K. D., Nye, J. A., Mills, K. E., Alexander, M. A., … & Henderson, M. E. (2017). Seasonal trends and phenology shifts in sea surface temperature on the North American northeastern continental shelf. Elem Sci Anth, 5.

Waugh, S., & Aller, R. C. (2017). N 2 production and fixation in deep-tier burrows of Squilla empusa in muddy sediments of Great Peconic Bay. Journal of Sea Research.

Tang, S., Zhang, M., & Xie, S. (2017). Investigating the Dependence of SCM Simulated Precipitation and Clouds on the Spatial Scale of Large‐Scale Forcing at SGP. Journal of Geophysical Research: Atmospheres.

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Pikitch, E. K., Boersma, P. D., Boyd, I. L., Conover, D. O., Cury, P., Essington, T. E., … & Plaganyi, E. (2017). The strong connection between forage fish and their predators: A response to Hilborn et al.(2017). Fisheries Research.

Young, C. S., & Gobler, C. J. (2017). The organizing effects of elevated CO2 on competition among estuarine primary producers. Scientific Reports, 7.

McCartain, L. D., Townsend, M., Thrush, S. F., Wethey, D. S., Woodin, S. A., Volkenborn, N., & Pilditch, C. A. (2017). The effects of thin mud deposits on the behaviour of a deposit-feeding tellinid bivalve: implications for ecosystem functioning. Marine and Freshwater Behaviour and Physiology, 50(4), 239-255.

Wehrmann, L.M., Riedinger, N., Brunner, B., Kamyshny Jr., A., Hubert, C.R.J., Herbert, L.C., Brüchert, V., Jørgensen, B.B., Ferdelman, T.G., Formolo M.J., 2017. Iron-controlled oxidative sulfur cycling recorded in the distribution and isotopic composition of sulfur species in glacially influenced fjord sediments of west Svalbard. Chemical Geology 466, 678-695.

Mao, X., Waugh, S., Langlois, K., Collier, J.L., Price, R., Garvey, J., Gobler, C. and Walker, H., 2017. Nitrogen transformations and microbial characterization in passive nitrogen removing biofilters (NRBs) for onsite wastewater treatment. Proceedings of the Water Environment Federation, 2017(15), pp.898-906.

Bond, M. E., Valentin-Albanese, J., Babcock, E. A., Abercrombie, D., Lamb, N. F., Miranda, A., Pikitch, E.K. & Chapman, D. D. (2017). Abundance and size structure of a reef shark population within a marine reserve has remained stable for more than a decade. Marine Ecology Progress Series, 576, 1-10.

Narenpitak, P., Bretherton, C. S., & Khairoutdinov, M. F. (2017). Cloud and circulation feedbacks in a near‐global aquaplanet cloud‐resolving model. Journal of Advances in Modeling Earth Systems.

Sollich, M; Yoshinaga, M.Y.; Häusler, S; Price, R.E.; Hinrichs, K-U; Bühring, S.I. (2017). Heat stress dictates microbial lipid composition along a thermal gradient in marine sediments. Frontiers in Microbiology.

J. Yu, R. E. Wilson and C. N. Flagg 2017 A Hydraulic Model for Multiple-Bay-Inlet Systems onBarrier Islands. Estuaries and Coasts DOI 10.1007/s12237-017-0294-2

Taylor GT, Suter EA, Li ZQ, Chow S, Stinton D, Zaliznyak T and Beaupré SR (2017) Single-Cell Growth Rates in Photoautotrophic Populations Measured by Stable Isotope Probing and Resonance Raman Microspectrometry. Front. Microbiol. 8:1449. doi: 10.3389/fmicb.2017.01449

Li, Y., & Zhang, M. (2017). The Role of Shallow Convection over the Tibetan Plateau. Journal of Climate, 30(15), 5791-5803.

Hattenrath-Lehmann, T. K., & Gobler, C. J. (2017). Identification of unique microbiomes associated with harmful algal blooms caused by Alexandrium fundyense and Dinophysis acuminata. Harmful Algae, 68, 17-30.

Bond, M. E., Valentin-Albanese, J., Babcock, E. A., Abercrombie, D., Lamb, N. F., Miranda, A., Pikitch, E.K. & Chapman, D. D. (2017). Abundance and size structure of a reef shark population within a marine reserve has remained stable for more than a decade. Marine Ecology Progress Series, 576, 1-10.

Kim, H. M. (2017). The impact of the mean moisture bias on the key physics of MJO propagation in the ECMWF reforecast. Journal of Geophysical Research: Atmospheres, 122(15), 7772-7784.

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Collier, J. L., Geraci-Yee, S., Lilje, O., & Gleason, F. H. (2017). Possible impacts of zoosporic parasites in diseases of commercially important marine mollusc species: part II. Labyrinthulomycota. Botanica Marina, 60(4), 409-417.

Gleason, F. H., Lilje, O., Dang, C., Geraci-Yee, S., & Collier, J. L. (2017). Possible impacts of zoosporic parasites in diseases of commercially important marine mollusc species: part I. Perkinsozoa. Botanica Marina, 60(4), 401-408.

Teague, K. A., & Gallicchio, N. (2017). The Evolution of Meteorology: A Look Into the Past, Present and Future of Weather Forecasting. John Wiley & Sons.

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Dheilly NM, Bolnick D, Bordenstein S, Brindley PJ, Figueres C, Holmes EC, Martinez Martinez J, Phillips AJ, Poulin R, Rosario K (2017). Parasite Microbiome Project: Systematic investigation of microbiome dynamics within and across parasite-host interactions mSystems 2(4)

McDowall, P., & Lynch, H. J. (2017). The importance of topographically corrected null models for analyzing ecological point processes. Ecology.

Madigan, D. J., Baumann, Z., Snodgrass, O. E., Dewar, H., Berman-Kowalewski, M., Weng, K. C., … & Fisher, N. S. (2017). Assessing Fukushima-derived radiocesium in migratory Pacific predators. Environmental Science & Technology, 51(16), 8962-8971.

Scott, R. C., Lubin, D., Vogelmann, A. M., & Kato, S. (2017). West Antarctic Ice Sheet cloud cover and surface radiation budget from NASA A-train satellites. Journal of Climate, 30(16), 6151-6170.

Rountos, K. J., Gobler, C. J., & Pikitch, E. K. (2017). Ontogenetic Differences in Swimming Behavior of Fish Exposed to the Harmful Dinoflagellate Cochlodinium polykrikoides. Transactions of the American Fisheries Society, 146(5), 1081-1091.

Zhou, X., Heus, T., & Kollias, P. (2017). Influences of Drizzle on Stratocumulus Cloudiness and Organization. Journal of Geophysical Research: Atmospheres.

Monastero, R. N., Karimi, R., Nyland, J. F., Harrington, J., Levine, K., & Meliker, J. R. (2017). Mercury exposure, serum antinuclear antibodies, and serum cytokine levels in the Long Island Study of Seafood Consumption: A cross-sectional study in NY, USA. Environmental Research, 156, 334-340.

Parishani, H., Pritchard, M. S., Bretherton, C. S., Wyant, M. C., & Khairoutdinov, M. (2017). Toward low cloud‐permitting cloud superparameterization with explicit boundary layer turbulence. Journal of Advances in Modeling Earth Systems.

Henderson, M. E., Mills, K. E., Thomas, A. C., Pershing, A. J., & Nye, J. A. Effects of spring onset and summer duration on fish species distribution and biomass along the Northeast United States continental shelf. Reviews in Fish Biology and Fisheries, 1-14.

Kang, Y., Kudela, R. M., & Gobler, C. J. Quantifying nitrogen assimilation rates of individual phytoplankton species and plankton groups during harmful algal blooms via sorting flow cytometry. Limnology and Oceanography: Methods.

Tridon, F., Battaglia, A., Luke, E., & Kollias, P. (2017). Rain retrieval from dual‐frequency radar Doppler spectra: validation and potential for a midlatitude precipitating case‐study. Quarterly Journal of the Royal Meteorological Society, 143(704), 1364-1380.

Taylor, D.  (2017) Palm Up, Palm Down. San Antonio, TX: Wings Press.

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Nicolas, J. P., Vogelmann, A. M., Scott, R. C., Wilson, A. B., Cadeddu, M. P., Bromwich, D. H., … & Powers, H. H. (2017). January 2016 extensive summer melt in West Antarctica favoured by strong El Niño. Nature communications, 8, ncomms15799.

Melnychuk, M. C., Dunton, K. J., Jordaan, A., McKown, K. A., & Frisk, M. G. (2017). Informing conservation strategies for the endangered Atlantic sturgeon using acoustic telemetry and multi‐state mark–recapture models. Journal of Applied Ecology, 54(3), 914-925.

Miller, C., Karimi, R., Zhang, Q., Yang, J., & Meliker, J. (2017). Mercury, eicosapentanoic acid and docosahexaenoic acid demonstrate limited effect on plasma paraoxonase-1 activity and blood pressure among avid seafood consumers in the Long Island Study of Seafood Consumption, NY, USA. International journal of hygiene and environmental health, 220(2), 373-377.

Isaacman-VanWertz, G., Massoli, P., O’Brien, R.E., Nowak, J.B., Canagaratna, M.R., Jayne, J.T., Worsnop, D.R., Su, L., Knopf, D.A., Misztal, P.K. and Arata, C., (2017). Using advanced mass spectrometry techniques to fully characterize atmospheric organic carbon: current capabilities and remaining gaps. Faraday Discussions.

Acquistapace, C., Kneifel, S., Löhnert, U., Kollias, P., Maahn, M., & Bauer-Pfundstein, M. (2017). Optimizing observations of drizzle onset with millimeter-wavelength radars. Atmospheric Measurement Techniques, 10(5), 1783-1802.

Chen, J., Pycke, B. F., Brownawell, B. J., Kinney, C. A., Furlong, E. T., Kolpin, D. W., & Halden, R. U. (2017). Occurrence, temporal variation, and estrogenic burden of five parabens in sewage sludge collected across the United States. Science of The Total Environment, 593, 368-374.

Rosen, B. H., Davis, T. W., Gobler, C. J., Kramer, B. J., & Loftin, K. A. (2017). Cyanobacteria of the 2016 Lake Okeechobee and Okeechobee Waterway harmful algal bloom (No. 2017-1054). US Geological Survey.

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Zheng, M., Chang, E.K., Colle, B.A., Luo, Y. and Zhu, Y., 2017. Applying Fuzzy Clustering to a Multimodel Ensemble for US East Coast Winter Storms: Scenario Identification and Forecast Verification. Weather and Forecasting, 32(3), pp.881-903.

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Foley, C. M., Lynch, M. A., Thorne, L. H., & Lynch, H. J. (2017). Listing Foreign Species under the Endangered Species Act: A Primer for Conservation Biologists. BioScience, bix027.

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Wolfe, C. L., Cessi, P., & Cornuelle, B. D. (2017). An Intrinsic Mode of Interannual Variability in the Indian Ocean. Journal of Physical Oceanography, 47(3), 701-719.

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Liu, Q., Collier, J. L., & Allam, B. (2017). Seasonality of QPX disease in the Raritan Bay (NY) wild hard clam (Mercenaria mercenaria) population. Aquaculture Research, 48(3), 1269-1278.

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Dvarskas, A. (2017). Dynamically linking economic models to ecological condition for coastal zone management: Application to sustainable tourism planning. Journal of Environmental Management, 188, 163-172.

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Herrington, A. R. and K. A. Reed (2017) An explanation for the sensitivity of the Community Atmosphere Model to horizontal resolution on aqua-planets. Journal of Climate. doi: 10.1175/JCLI-D-16-0069.1

Karatayev, A. Y., Burlakova, L. E., & Padilla, D. K. Can introduced species replace lost biodiversity? A test with freshwater molluscs. Hydrobiologia, 1-12.

Hattenrath-Lehmann, T. K., Ossiboff, R. J., Burnell, C. A., Rauschenberg, C. D., Hynes, K., Burke, R. L., … & Gobler, C. J. (2017). The role of a PSP-producing Alexandrium bloom in an unprecedented diamondback terrapin (Malaclemys terrapin) mortality event in Flanders Bay, New York, USA. Toxicon, 129, 36-43.

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McCoy, E., Borrett, S. R., LaPeyre, M. K., & Peterson, B. J. (2017). Estimating the impact of oyster restoration scenarios on transient fish production. Restoration Ecology.

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Martinez, C. M., Duplisea, D. E., Cerrato, R. M., & Frisk, M. G. (2017). Exploration of Trends in Interspecific Abundance-Occupancy Relationships Using Empirically Derived Simulated Communities. PloS one, 12(1), e0170816.

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Scoccimarro, E., Fogli, P. G., Reed, K. A., Gualdi, S., Masina, S., & Navarra, A. (2017). Tropical Cyclone Interaction with the Ocean: The Role of High-Frequency (Subdaily) Coupled Processes. Journal of Climate, 30(1), 145-162.

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Kim, O. Y., Kim, H. M., Lee, M. I., & Min, Y. M. (2017). Dynamical–statistical seasonal prediction for western North Pacific typhoons based on APCC multi-models. Climate Dynamics, 48(1-2), 71-88.

Pochron, S., Fiorenza, A., Sperl, C., Ledda, B., Patterson, C., Tucker, C., … & Panico, N. (2017). The response of earthworms (Eisenia fetida) and soil microbes to the crumb rubber material used in artificial turf fields. Chemosphere.

Ghate, V. P., & Kollias, P. (2016). On the controls of daytime precipitation in the Amazonian dry season. Journal of Hydrometeorology, 17(12), 3079-3097.

Rodellas, V., Garcia-Orellana, J., Trezzi, G., Masqué, P., Stieglitz, T.C., Bokuniewicz, H., Cochran, J.K. and Berdalet, E., (2017). Using the radium quartet to quantify submarine groundwater discharge and porewater exchange. Geochimica et Cosmochimica Acta, 196, pp.58-73.

Cao, L., Chen, Y., Dong, S., Hanson, A., Huang, B., Leadbitter, D., Little, D.C., Pikitch, E.K., Qiu, Y., de Mitcheson, Y.S. and Sumaila, U.R., 2017. Opportunity for marine fisheries reform in China. Proceedings of the National Academy of Sciences, 114(3), pp.435-442.

Feng, H., Qian, Y., Cochran, J.K., Zhu, Q., Hu, W., Yan, H., Li, L., Huang, X., Chu, Y.S., Liu, H., Yoo, S., & Liu, C.J., (2017) Nanoscale measurement of trace element distributions in Spartina alterniflora root tissue during dormancy, Scientific Reports, 7:40420.

Furman, B. T., Jackson, L. J., & Peterson, B. J. (2017). Edaphic resource foraging by Zostera marina (Linnaeus) patches. Journal of Experimental Marine Biology and Ecology, 486, 214-221.

Chang, E. K. (2017). Projected Significant Increase in the Number of Extreme Extratropical Cyclones in the Southern Hemisphere. Journal of Climate, (2017).

Morse, R. E., Friedland, K. D., Tommasi, D., Stock, C., & Nye, J. (2017). Distinct zooplankton regime shift patterns across ecoregions of the US Northeast continental shelf Large Marine Ecosystem. Journal of Marine Systems, 165, 77-91.

Jin, J., Zeng, Q., Wu, L., Liu, H., & Zhang, M. (2017). Formulation of a new ocean salinity boundary condition and impact on the simulated climate of an oceanic general circulation model. Science China Earth Sciences, 60(3), 491-500.

Flood, R. D., Violante, R. A., Gorgas, T., Schwarz, E., Grützner, J., Uenzelmann-Neben, G., … & St-Onge, G. (2017). IODP workshop: developing scientific drilling proposals for the Argentina Passive Volcanic Continental Margin (APVCM)–basin evolution, deep biosphere, hydrates, sediment dynamics and ocean evolution. Scientific Drilling, 22, 49.

Weinstein, A., Navarrete, L., Ruppel, C., Weber, T.C., Leonte, M., Kellermann, M.Y., Arrington, E.C., Valentine, D.L., Scranton, M.I. and Kessler, J.D., 2016. Determining the flux of methane into Hudson Canyon at the edge of methane clathrate hydrate stability. Geochemistry, Geophysics, Geosystems, 17(10), pp.3882-3892.

Wu, C., Lin, Z., He, J., Zhang, M., Liu, X., Zhang, R., & Brown, H. (2016). A process‐oriented evaluation of dust emission parameterizations in CESM: Simulation of a typical severe dust storm in East Asia. Journal of Advances in Modeling Earth Systems, 8(3), 1432-1452.

Geller, M. A., Zhou, T., Shindell, D., Ruedy, R., Aleinov, I., Nazarenko, L., … & Field, R. D. (2016). Modeling the QBO–Improvements Resulting from Higher Model Vertical Resolution. Journal of Advances in Modeling Earth Systems.

Tang, T., & Lee, C. (2016). The role of surface layer proteins in the degradation of a photosynthetic prokaryote, the cyanobacterium Synechococcus sp. Marine Chemistry, 186, 33-45.

Harke, M. J., Jankowiak, J. G., Morrell, B. K., & Gobler, C. J. (2016). Transcriptomic responses in the bloom-forming cyanobacterium Microcystis induced during exposure to zooplankton. Applied and Environmental Microbiology, AEM-02832.

Gobler, C. J., Clark, H. R., Griffith, A. W., & Lusty, M. W. (2016). Diurnal Fluctuations in Acidification and Hypoxia Reduce the Growth and Survival of Larval and Juvenile Bay Scallops (Argopecten irradians) and Hard Clams (Mercenaria mercenaria). Frontiers in Marine Science, 3, 282.

Moffet, R.C., O’Brien, R.E., Alpert, P.A., Kelly, S.T., Pham, D.Q., Gilles, M.K., Knopf, D.A. and Laskin, A., 2016. Morphology and mixing of black carbon particles collected in central California during the CARES field study. Atmospheric Chemistry and Physics, 16(22), pp.14515-14525.

Duplisea, D. E., Frisk, M. G., & Trenkel, V. M. (2016). Extinction Debt and Colonizer Credit on a Habitat Perturbed Fishing Bank. PloS one, 11(11), e0166409.

Li, L., Liu, H., Wang, L., Yue, S., Tong, X., Zaliznyak, T., Taylor, G.T. and Wong, S.S., 2016. Chemical Strategies for Enhancing Activity and Charge Transfer in Ultrathin Pt Nanowires Immobilized onto Nanotube Supports for the Oxygen Reduction Reaction. ACS applied materials & interfaces, 8(50), pp.34280-34294.

Acharya, B., Alexandre, J., Baines, S., Benes, P., Bergmann, B., Bernabéu, J., … & de Montigny, M. (2016). Search for magnetic monopoles with the MoEDAL forward trapping detector in 13 TeV proton-proton collisions at the LHC. arXiv preprint arXiv:1611.06817.

Gownaris, N. J., Pikitch, E. K., Aller, J. Y., Kaufman, L. S., Kolding, J., Lwiza, K. M., … & Rountos, K. J. (2016). Fisheries and water level fluctuations in the world’s largest desert lake. Ecohydrology.

Oue, M., P. Kollias, K. W. North, A. Tatarevic, S. Endo, A. M. Vogelmann, and W. I. Gustafson (2016): Estimation of cloud fraction profile in shallow convection using a scanning cloud radar. Geophysical Research Letters, 43,10998–11006, doi: 10.1002/2016GL070776.

Yu, J. (2016). A terrain-following model of wave boundary layers. Ocean Modelling, 108, 20-29.

Zeng, Y., Walker, H., & Zhu, Q. (2016). Reduction of nitrate by NaY zeolite supported Fe, Cu/Fe and Mn/Fe nanoparticles. Journal of Hazardous Materials.

Swanson, R. L., & Bowman, M. J. (2016). Between Stony Brook Harbor Tides: The Natural History of a Long Island Pocket Bay. SUNY Press.

Swanson, R. L., & Bowman, M. J. (2016). Between Stony Brook Harbor Tides: The Natural History of a Long Island Pocket Bay. SUNY Press.

Lu, Q., Ruan, Z., Wang, D. P., Chen, D., & Wu, Q. (2016). Zonal transport from the western boundary and its role in warm water volume changes during ENSO. Journal of Physical Oceanography, (2016).

Tang, S., Xie, S., Zhang, Y., Zhang, M., Schumacher, C., Upton, H., … & Feng, Z. (2016). Large-scale vertical velocity, diabatic heating and drying profiles associated with seasonal and diurnal variations of convective systems observed in the GoAmazon2014/5 experiment. Atmospheric Chemistry and Physics, 16(22), 14249-14264.

Lynch, M. A., Foley, C. M., Thorne, L. H., & Lynch, H. J. (2016). Improving the use of biological data in Antarctic management. Antarctic Science, 28(6), 425-431.

Pendergrass, A. G., Reed, K. A., & Medeiros, B. (2016). The link between extreme precipitation and convective organization in a warming climate: Global radiative‐convective equilibrium simulations. Geophysical Research Letters, 43(21).

Ohnemus, D.C., Rauschenberg, S., Krause, J.W., Brzezinski, M.A., Collier, J.L., Geraci-Yee, S., Baines, S.B. and Twining, B.S., 2016. Silicon content of individual cells of Synechococcus from the North Atlantic Ocean. Marine Chemistry, 187, pp.16-24.

Kulp, R. E., & Peterson, B. J. (2016). Evaluating the Impact of Mesopredators on Oyster Restoration in the New York Metropolitan Region. Journal of Shellfish Research, 35(4), 801-807.

Molthan, A. L., Colle, B. A., Yuter, S. E., & Stark, D. (2016). Comparisons of Modeled and Observed Reflectivities and Fall Speeds for Snowfall of Varied Riming Degrees during Winter Storms on Long Island, New York. Monthly Weather Review, 144(11), 4327-4347.

Fields, A. T., Feldheim, K. A., Gelsleichter, J., Pfoertner, C., & Chapman, D. D. (2016). Population structure and cryptic speciation in bonnethead sharks Sphyrna tiburo in the south‐eastern USA and Caribbean. Journal of Fish Biology, 89(5), 2219-2233.

Clark, H. R., & Gobler, C. J. (2016). Diurnal fluctuations in CO2 and dissolved oxygen concentrations do not provide a refuge from hypoxia and acidification for early-life-stage bivalves. Marine Ecology Progress Series, 558, 1-14.

Baumann, H., and J. Nye (2016). Laboratory study of long-term growth in juvenile Menidia menidia (Atlantic silverside) at contrasting CO2 levels for 16 to 122 days in 2015. Biological and Chemical Oceanography Data Management Office (BCO-DMO). http://www.bco-dmo.org/dataset/651461/data

Price, R. E., Breuer, C., Reeves, E., Bach, W., & Pichler, T. (2016). Arsenic bioaccumulation and biotransformation in deep-sea hydrothermal vent organisms from the PACMANUS hydrothermal field, Manus Basin, PNG. Deep Sea Research Part I: Oceanographic Research Papers, 117, 95-106.

Levinton, J. S. (2016). Bilateral linkage of monomorphic and dimorphic limb sizes in fiddler crabs. Biological Journal of the Linnean Society.

Walker, B. D., Primeau, F. W., Beaupré, S. R., Guilderson, T. P., Druffel, E. R. M., & McCarthy, M. D. (2016). Linked changes in marine dissolved organic carbon molecular size and radiocarbon age. Geophysical Research Letters, 43(19).

Babcock Jr, R. W., Wellbrock, A., Slenders, P., & Radway, J. C. (2015). Improving mass transfer in an inclined tubular photobioreactor. Journal of Applied Phycology, 1-9.

Jordi, A., Wang, D. P., & Hamilton, P. (2016). Near-inertial motions in the DeSoto Canyon during Hurricane Georges. Ocean Modelling, 105, 34-43.

D’Elia, M., Warren, J. D., Rodriguez-Pinto, I., Sutton, T. T., Cook, A., & Boswell, K. M. (2016). Diel variation in the vertical distribution of deep-water scattering layers in the Gulf of Mexico. Deep Sea Research Part I: Oceanographic Research Papers.

Beaupré, S. R., Mahmoudi, N., & Pearson, A. (2016). IsoCaRB: A novel bioreactor system to characterize the lability and natural carbon isotopic (14C, 13C) signatures of microbially respired organic matter. Limnology and Oceanography: Methods, 14(10), 668-681.

Dahl, S. F. and Allam, B. (2015), Hard clam relocation as a potential strategy for QPX disease mitigation within an enzootic estuary. Aquaculture Research. doi: 10.1111/are.12793

Rubin, E., Werneburg, G. T., Espinosa, E. P., Thanassi, D. G., & Allam, B. (2016). Identification and characterization of peptidases secreted by quahog parasite unknown (QPX), the protistan parasite of hard clams. Diseases of aquatic organisms, 122(1), 21-33.

Kang, Y., Tang, Y. Z., Taylor, G. T., & Gobler, C. J. (2016). Discovery of a resting stage in the harmful, brown tide‐causing pelagophyte, Aureoumbra lagunensis: a mechanism potentially facilitating recurrent blooms and geographic expansion. Journal of Phycology.

Lee, C. S., Lutcavage, M. E., Chandler, E., Madigan, D. J., Cerrato, R. M., & Fisher, N. S. (2016). Declining Mercury Concentrations in Bluefin Tuna Reflect Reduced Emissions to the North Atlantic Ocean. Environmental Science & Technology.

Yi, W., Nozick, L., Davidson, R., Blanton, B., & Colle, B. (2017). Optimization of the issuance of evacuation orders under evolving hurricane conditions. Transportation Research Part B: Methodological, 95, 285-304.

Urmy, S. S., & Warren, J. D. (2016). Quantitative ornithology with a commercial marine radar: standard‐target calibration, target detection and tracking, and measurement of echoes from individuals and flocks. Methods in Ecology and Evolution.

Fang, M., Albrecht, B., Jung, E., Kollias, P., Jonsson, H., & PopStefanija, I. (2016). Retrieval of Vertical Air Motion in Precipitating Clouds Using Mie Scattering and Comparison with in-situ Measurements. Journal of Applied Meteorology and Climatology, (2016).

Owen, K., Kavanagh, A. S., Warren, J. D., Noad, M. J., Donnelly, D., Goldizen, A. W., & Dunlop, R. A. (2016). Potential energy gain by whales outside of the Antarctic: prey preferences and consumption rates of migrating humpback whales (Megaptera novaeangliae). Polar Biology, 1-13.

Colle, B. A., Naeger, A. R., & Molthan, A. (2016). Structure and Evolution of a Warm Frontal Precipitation Band During the GPM Cold Season Precipitation Experiment (GCPEx). Monthly Weather Review, (2016).

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Walker, B. D., Beaupré, S. R., Guilderson, T. P., McCarthy, M. D., & Druffel, E. R. M. (2016). Pacific carbon cycling constrained by organic matter size, age and composition relationships. Nature Geoscience.

Wang, B., Knopf, D. A., China, S., Arey, B., Harder, T. H., Gilles, M. K., & Laskin, A. (2016). Direct observation of ice nucleation events on individual atmospheric particles, Phys. Chem. Chem. Phys.,, 18, 29721-29731

Baumann, Z., Mason, R.P., Conover, D.O., Balcom, P., Chen, C.Y., Buckman, K.L., Fisher, N.S. and Baumann, H., 2016. Mercury bioaccumulation increases with latitude in a coastal marine fish (Atlantic silverside, Menidia menidia). Canadian Journal of Fisheries and Aquatic Sciences, (999), pp.1-7.

Wang, C., Baumann, Z., Madigan, D. J., & Fisher, N. S. (2016). Contaminated Marine Sediments As a Source of Cesium Radioisotopes for Benthic Fauna near Fukushima. Environmental Science & Technology, 50(19), 10448-10455.

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Lynch, H. J., White, R., Naveen, R., Black, A., Meixler, M. S., & Fagan, W. F. (2016). In stark contrast to widespread declines along the Scotia Arc, a survey of the South Sandwich Islands finds a robust seabird community. Polar Biology, 1-11.

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Yu, H., Zhang, M., Lin, W., & Zhang, X. (2016). Cloud transitions: comparison of temporal variation in the southeastern Pacific with the spatial variation in the northeastern Pacific at low latitudes. International Journal of Climatology.

Rauser, F., M. Alqadi, S. Arowolo, N. Baker, J. Bedard, E. Behrens, N. Dogulu, L.G. Domingues, A. Frassoni, J. Keller, S. Kirkpatrick, G. Langendijk, M. Mirsafa, S. Mohammad, A.K. Naumann, M. Osman, K. Reed, M. Rothmüller, V. Schemann, A. Singh, S. Sonntag, F. Tummon, D. Victor, M.Q. Villafuerte, J.P. Walawender, and M. Zaroug, 2017: Earth System Science Frontiers: An Early Career Perspective. Bull. Amer. Meteor. Soc., 98, 1120–1127, https://doi.org/10.1175/BAMS-D-16-0025.1

Madigan, D. J., Chiang, W. C., Wallsgrove, N. J., Popp, B. N., Kitagawa, T., Choy, C. A., … & Sun, C. L. (2016). Intrinsic tracers reveal recent foraging ecology of giant Pacific bluefin tuna at their primary spawning grounds. Marine Ecology Progress Series, 553, 253-266.

Archer, C. L., Colle, B. A., Veron, D. L., Veron, F., & Sienkiewicz, M. J. (2016). On the predominance of unstable atmospheric conditions in the marine boundary layer offshore of the US northeastern coast. Journal of Geophysical Research: Atmospheres, 121(15), 8869-8885.

Geller, M. A., Zhou, T., & Yuan, W. (2016). The QBO, gravity waves forced by tropical convection, and ENSO. Journal of Geophysical Research: Atmospheres, 121(15), 8886-8895.

Lee, C. S., & Fisher, N. S. (2016). Methylmercury uptake by diverse marine phytoplankton. Limnology and Oceanography, 61(5), 1626-1639.

Hannides, A. K., & Aller, R. C. (2016). Priming effect of benthic gastropod mucus on sedimentary organic matter remineralization. Limnology and Oceanography.

Stubler, A. D., & Peterson, B. J. Ocean acidification accelerates net calcium carbonate loss in a coral rubble community. Coral Reefs, 1-9.

Chang, E. K., & Yau, A. M. (2016). Northern Hemisphere winter storm track trends since 1959 derived from multiple reanalysis datasets. Climate Dynamics, 47(5-6), 1435-1454.

Colle, B. A., Sienkiewicz, M. J., Archer, C., Veron, D., Veron, F., Kempton, W., & Mak, J. E. (2015). Improving the Mapping and Prediction of Offshore Wind Resources (IMPOWR): Experimental Overview and First Results. Bulletin of the American Meteorological Society, (2015).

Dasgupta, S., Di Giulio, R. T., Drollette, B. D., Plata, D., Brownawell, B. J., & McElroy, A. E. (2016). Hypoxia depresses CYP1A induction and enhances DNA damage, but has minimal effects on antioxidant responses in sheepshead minnow (Cyprinodon variegatus) larvae exposed to dispersed crude oil. Aquatic Toxicology.

Knoll, K., Landman, N. H., Cochran, J. K., Macleod, K. G., & Sessa, J. A. (2016). Microstructural preservation and the effects of diagenesis on the carbon and oxygen isotope composition of Late Cretaceous aragonitic mollusks from the Gulf Coastal Plain and the Western Interior Seaway. American Journal of Science, 316(7), 591-613.

Theis, K. R., Dheilly, N. M., Klassen, J. L., Brucker, R. M., Baines, J. F., Bosch, T. C., … & Sapp, J. (2016). Getting the hologenome concept right: An eco-evolutionary framework for hosts and their microbiomes. mSystems, 1(2), e00028-16.

Stubler, A. D., Jackson, L. J., Furman, B. T., & Peterson, B. J. (2016). Seed Production Patterns in Zostera marina: Effects of Patch Size and Landscape Configuration. Estuaries and Coasts, 1-9.

Moffet, R. C., O’Brien, R. E., Alpert, P., Kelly, S. T., Pham, D. Q., Gilles, M. K., … & Laskin, A. Morphology and Mixing of BC Particles Collected in Central California During the CARES Field Study.

Hahn, M. A., & Dheilly, N. M. (2016). Experimental models to study the role of microbes in host-parasite interactions. Frontiers in Microbiology, 7.

Uno, S., Kokushi, E., Kawano, M., McElroy, A. E., & Koyama, J. (2016). Toxic evaluations of sediments in Tokyo Bay, Japan, using Japanese medaka embryos. Environmental Science and Pollution Research, 1-8.

Wang, K., Espinosa, E. P., & Allam, B. (2016). Effect of “heat shock” treatments on QPX disease and stress response in the hard clam, Mercenaria mercenaria. Journal of invertebrate pathology, 138, 39-49.

Rodriguez-Mora, M. J., Edgcomb, V. P., Taylor, C., Scranton, M. I., Taylor, G. T., & Chistoserdov, A. Y. (2016). The diversity of sulfide oxidation and sulfate reduction genes expressed by the bacterial communities of the Cariaco Basin, Venezuela. The open microbiology journal, 10, 140.

Patton, E. G., Guenther, A. B., Shepson, P. B., Miller, D. O., Brune, W. H., Misztal, P. K., … & Mak, J. E. (2016). Understanding isoprene photooxidation using observations and modeling over a subtropical forest in the southeastern US. Atmospheric Chemistry and Physics, 16(12), 7725.

Sagarese, S. R., Frisk, M. G., Cerrato, R. M., Sosebee, K. A., Musick, J. A., & Rago, P. J. (2016). Diel Variations in Survey Catch Rates and Survey Catchability of Spiny Dogfish and their Pelagic Prey in the Northeast US Continental Shelf Large Marine Ecosystem. Marine and Coastal Fisheries, 8(1), 244-262.

Bacmeister, J. T., Reed, K. A., Hannay, C., Lawrence, P., Bates, S., Truesdale, J. E., … & Levy, M. (2016). Projected changes in tropical cyclone activity under future warming scenarios using a high-resolution climate model. Climatic Change, 1-14.

Swanson, R. L., Lwiza, K., Willig, K., & Morris, K. (2016). Superstorm Sandy marine debris wash-ups on Long Island—What happened to them?. Marine pollution bulletin.

Breece, M. W., Fox, D. A., Dunton, K. J., Frisk, M. G., Jordaan, A., & Oliver, M. J. (2016). Dynamic seascapes predict the marine occurrence of an endangered species: Atlantic Sturgeon Acipenser oxyrinchus oxyrinchus. Methods in Ecology and Evolution.

Wehrmann, L.M. and Riedinger, N., 2016. The Sedimentary Deep Subseafloor Biosphere, Reference Module in Earth Systems and Environmental Sciences. Elsevier. http://dx.doi.org/10.1016/B978-0-12-409548-9.09741-4

Hu, Z., Wang, D. P., Pan, D., He, X., Miyazawa, Y., Bai, Y., … & Gong, F. (2016). Mapping surface tidal currents and Changjiang plume in the East China Sea from Geostationary Ocean Color Imager. Journal of Geophysical Research: Oceans.

Hall, D. M., Ullrich, P. A., Reed, K. A., Jablonowski, C., Nair, R. D., & Tufo, H. M. (2016). Dynamical Core Model Intercomparison Project (DCMIP) tracer transport test results for CAM‐SE. Quarterly Journal of the Royal Meteorological Society, 142(697), 1672-1684.

Urmy, S. S., Williamson, C. E., Leach, T. H., Schladow, S. G., Overholt, E. P., & Warren, J. D. (2016). Vertical redistribution of zooplankton in an oligotrophic lake associated with reduction in ultraviolet radiation by wildfire smoke. Geophysical Research Letters, 43(8), 3746-3753.

Karimi, R., Chen, C. Y., & Folt, C. L. (2016). Comparing nearshore benthic and pelagic prey as mercury sources to lake fish: the importance of prey quality and mercury content. Science of The Total Environment, 565, 211-221.

Rahman, S., Aller, R. C., & Cochran, J. K. (2016). Cosmogenic 32Si reveals biogenic silica burial in deltas rivals the Southern Ocean siliceous ooze. Geophysical Research Letters, 43, 7124-7142.

Zhang, M., Somerville, R. C., & Xie, S. (2016). The SCM concept and creation of ARM forcing datasets. Meteorological Monographs, 57, 24-1.

Madigan, D.J., Chiang, W.C., Wallsgrove, N.J., Popp, B.N., Kitagawa, T., Choy, C.A., Tallmon, J., Ahmed, N., Fisher, N.S. and Sun, C.L., (2016). Intrinsic tracers reveal recent foraging ecology of giant Pacific bluefin tuna at their primary spawning grounds. Marine Ecology Progress Series, 553, pp.253-266.

Swanson, L., Dorsch, M., Giampieri, M., Orton, P., Parris, A. S., & Sanderson, E. W. (2016). Dynamics of the Biophysical Systems of Jamaica Bay. In Prospects for Resilience (pp. 65-89). Island Press/Center for Resource Economics.

Harke, M. J., Steffen, M. M., Gobler, C. J., Otten, T. G., Wilhelm, S. W., Wood, S. A., & Paerl, H. W. (2016). A review of the global ecology, genomics, and biogeography of the toxic cyanobacterium, Microcystis spp. Harmful Algae, 54, 4-20.

Davis, T. W., & Gobler, C. J. (2016). Preface for Special Issue on “Global expansion of harmful cyanobacterial blooms: Diversity, ecology, causes, and controls”. Harmful Algae, 54, 1-3.

Gobler, C. J., Burkholder, J. M., Davis, T. W., Harke, M. J., Johengen, T., Stow, C. A., & Van de Waal, D. B. (2016). The dual role of nitrogen supply in controlling the growth and toxicity of cyanobacterial blooms. Harmful Algae, 54, 87-97.

Wang, L., Han, J., Sundahl, B., Thornton, S., Zhu, Y., Zhou, R., Jaye, C., Liu, H., Li, Z.Q., Taylor, G.T. and Fischer, D.A., 2016. Ligand-induced dependence of charge transfer in nanotube–quantum dot heterostructures. Nanoscale, 8(34), pp.15553-15570.

Thorne, L. H., Conners, M. G., Hazen, E. L., Bograd, S. J., Antolos, M., Costa, D. P., & Shaffer, S. A. (2016). Effects of El Niño-driven changes in wind patterns on North Pacific albatrosses. Journal of The Royal Society Interface, 13(119), 20160196.

Zarzycki, C. M., Reed, K. A., Bacmeister, J. T., Craig, A. P., Bates, S. C., & Rosenbloom, N. A. (2016). Impact of surface coupling grids on tropical cyclone extremes in high-resolution atmospheric simulations. Geoscientific Model Development, 9(2), 779-788.

Smirnov, O., Zhang, M., Xiao, T., Orbell, J., Lobben, A., & Gordon, J. (2016). The relative importance of climate change and population growth for exposure to future extreme droughts. Climatic Change, 138(1-2), 41-53.

Kalesse, H., Szyrmer, W., Kneifel, S., Kollias, P., & Luke, E. (2016). Fingerprints of a riming event on cloud radar Doppler spectra: observations and modeling. Atmospheric Chemistry and Physics, 16(5), 2997-3012.

Bender, N. A., Crosbie, K., & Lynch, H. J. (2016). Patterns of tourism in the Antarctic Peninsula region: a 20-year analysis. Antarctic Science, 28(03), 194-203.

Kim, H. M., Kim, D., Vitart, F., Toma, V. E., Kug, J. S., & Webster, P. J. (2016). MJO Propagation across the Maritime Continent in the ECMWF Ensemble Prediction System. Journal of Climate, 29(11), 3973-3988.

Laskin, A., Gilles, M. K., Knopf, D. A., Wang, B., & China, S. (2016). Progress in the analysis of complex atmospheric particles. Annual Review of Analytical Chemistry, 9, 117-143.

Bony, S., Stevens, B., Coppin, D., Becker, T., Reed, K. A., Voigt, A., & Medeiros, B. (2016). Thermodynamic control of anvil cloud amount. Proceedings of the National Academy of Sciences, 201601472.

Chen, C. Y., Ward, D. M., Williams, J. J., & Fisher, N. S. (2016). Metal bioaccumulation by estuarine food webs in New England, USA. Journal of marine science and engineering, 4(2), 41.

Gilbert, F., Hulth, S., Grossi, V., & Aller, R. C. (2016). Redox oscillation and benthic nitrogen mineralization within burrowed sediments: An experimental simulation at low frequency. Journal of Experimental Marine Biology and Ecology, 482, 75-84.

Woodin, S. A., Volkenborn, N., Pilditch, C. A., Lohrer, A. M., Wethey, D. S., Hewitt, J. E., & Thrush, S. F. (2016). Same pattern, different mechanism: Locking onto the role of key species in seafloor ecosystem process. Scientific Reports, 6, 26678.

Kawano, M., Uno, S., Koyama, J., Kokushi, E., & McElroy, A. (2016). Effects of oxygenated polycyclic aromatic hydrocarbons on the early life stages of Japanese medaka. Environmental Science and Pollution Research, 1-8.

Wang, W.-L., Armstrong, R. A., Cochran, J. K., and Heilbrun, C. (2016) 230Th and 234Th as coupled tracers of particle cycling in the ocean: A maximum likelihood approach., Deep Sea Research Part I: Oceanographic Research Papers, 111, 61-70., http://dx.doi.org/10.1016/j.dsr.2016.02.003.

Warren, J. D., Leach, T. H., & Williamson, C. E. (2016). Measuring the distribution, abundance, and biovolume of zooplankton in an oligotrophic freshwater lake with a 710 kHz scientific echosounder. Limnology and Oceanography: Methods.

Landman, N. H., Kruta, I., Denton, J. S., & Cochran, J. K. (2016). Getting unhooked: comment on the hypothesis that heteromorph ammonites were attached to kelp branches on the sea floor, as proposed by. Journal of Molluscan Studies, 82(2), 351-355

Pershing, A.J., Alexander, M.A., Hernandez, C.M., Kerr, L.A., Le Bris, A., Mills, K.E., Nye, J.A., Record, N.R., Scannell, H.A., Scott, J.D. and Sherwood, G.D., 2016. Response to Comments on “Slow adaptation in the face of rapid warming leads to collapse of the Gulf of Maine cod fishery”. Science, 352(6284), pp.423-423.

Shackell, N. L., Frank, K. T., Nye, J. A., & den Heyer, C. E. (2016). A transboundary dilemma: dichotomous designations of Atlantic halibut status in the Northwest Atlantic. ICES Journal of Marine Science: Journal du Conseil, fsw042.

Gobler, C. J., & Baumann, H. (2016). Hypoxia and acidification in ocean ecosystems: coupled dynamics and effects on marine life. Biology Letters, 12(5), 20150976.

Young, C. S., & Gobler, C. J. (2016). Ocean Acidification Accelerates the Growth of Two Bloom-Forming Macroalgae. PloS one, 11(5), e0155152.

Druffel, E. R. M., Beaupré, S. R., & Ziolkowski, L. A. (2016). Radiocarbon in the Oceans. In Radiocarbon and Climate Change (pp. 139-166). Springer International Publishing.

Chapperon, C., Volkenborn, N., Clavier, J., Séité, S., Seabra, R., & Lima, F. P. (2016). Exposure to solar radiation drives organismal vulnerability to climate: Evidence from an intertidal limpet. Journal of Thermal Biology, 57, 92-100.

Trumbore, S. E., Xu, X., Santos, G. M., Czimczik, C. I., Beaupré, S. R., Pack, M. A., … & Ziolkowski, L. (2016). Preparation for radiocarbon analysis. In Radiocarbon and Climate Change (pp. 279-315). Springer International Publishing.

Wehrmann, L. M., Ockert, C., Mix, A. C., Gussone, N., Teichert, B. M. A., & Meister, P. (2016). Repeated occurrences of methanogenic zones, diagenetic dolomite formation and linked silicate alteration in southern Bering Sea sediments (Bowers Ridge, IODP Exp. 323 Site U1341). Deep Sea Research Part II: Topical Studies in Oceanography, 125, 117-132.

Moore, M.J, McElroy, A.E. Geoghegan, P., Siskey, M.R. and Pembroke, A.E. 2016. Founder Monitoring Report: 2015 Results. Boston:Massachusetts Water Resources Authority. Report 2016-05. 40 pp.

Pandey, R., Usui, K., Livingstone, R. A., Fischer, S. A., Pfaendtner, J., Backus, E. H., Knopf, D.A. … & Scheel, J. F. (2016). Ice-nucleating bacteria control the order and dynamics of interfacial water. Science Advances, 2(4), e1501630.

Chen, J., Liu, Y., Zhang, M., & Peng, Y. (2016). New Understanding and Quantification of the Regime Dependence of Aerosol‐Cloud Interaction for Studying Aerosol Indirect Effects. Geophysical Research Letters.

Martinez, C. M., Rohlf, F. J., & Frisk, M. G. (2016). Sexual dimorphism in sister species of Leucoraja skate and its relationship to reproductive strategy and life history. Evolution & Development.

Cahill, A. E., & Levinton, J. S. (2016). Genetic differentiation and reduced genetic diversity at the northern range edge of two species with different dispersal modes. Molecular ecology, 25(2), 515-526.

Soulet, G., Skinner, L. C., Beaupré, S. R., & Galy, V. (2016). A Note on Reporting of Reservoir 14 C Disequilibria and Age Offsets. Radiocarbon, 58(1), 205-211.

Baines, S. B., Chen, X., Vogt, S., Fisher, N. S., Twining, B. S., & Landry, M. R. (2016). Microplankton trace element contents: implications for mineral limitation of mesozooplankton in an HNLC area. Journal of Plankton Research, fbv109.

Trammell, J. H., Jiang, X., Li, L., Kao, A., Zhang, G. J., Chang, E. K., & Yung, Y. (2016). Temporal and Spatial Variability of Precipitation from Observations and Models*. Journal of Climate, 29(7), 2543-2555.

Bluestein, H. B., French, M. M., Snyder, J. C., & Houser, J. B. (2016). Doppler Radar Observations of Anticyclonic Tornadoes in Cyclonically Rotating, Right-Moving Supercells. Monthly Weather Review, 144(4), 1591-1616.

Fisher, S. C., Phillips, P. J., Brownawell, B. J., & Browne, J. P. (2016). Comparison of wastewater-associated contaminants in the bed sediment of Hempstead Bay, New York, before and after Hurricane Sandy. Marine Pollution Bulletin.

Levy, H., Clucas, G.V., Rogers, A.D., Leaché, A.D., Ciborowski, K.L., Polito, M.J., Lynch, H.J., Dunn, M.J. and Hart, T., (2016). Population structure and phylogeography of the Gentoo Penguin (Pygoscelis papua) across the Scotia Arc. Ecology and evolution.

Griffith, A. W., & Gobler, C. J. (2016). Temperature controls the toxicity of the ichthyotoxic dinoflagellate Cochlodinium polykrikoides. MEPS, 545, 63-76.

Reed, K. A., & Medeiros, B. (2016). A reduced complexity framework to bridge the gap between AGCMs and cloud‐resolving models. Geophysical Research Letters.

Pascal, L., Maire, O., Volkenborn, N., Lecroart, P., Bichon, S., de Montaudouin, X., … & Deflandre, B. (2016). Influence of the mud shrimp Upogebia pusilla (Decapoda: Gebiidea) on solute and porewater exchanges in an intertidal seagrass (Zostera noltei) meadow of Arcachon Bay: An experimental assessment. Journal of Experimental Marine Biology and Ecology, 477, 69-79.

Sanchez-Franks, A., Hameed, S., & Wilson, R. E. (2015). The Icelandic Low as a Predictor of the Gulf Stream Northwall Position. Journal of Physical Oceanography, (2015).

Allam, B., & Espinosa, E. P. (2016). Bivalve immunity and response to infections: Are we looking at the right place?. Fish & Shellfish Immunology.

Moniruzzaman, M., Gann, E. R., LeCleir, G. R., Kang, Y., Gobler, C. J., & Wilhelm, S. W. (2016). Diversity and dynamics of algal Megaviridae members during a harmful brown tide caused by the pelagophyte, Aureococcus anophagefferens. FEMS Microbiology Ecology, fiw058.

Chapperon, C., Volkenborn, N., Clavier, J., Séité, S., Seabra, R., & Lima, F. P. (2016). Exposure to solar radiation drives organismal vulnerability to climate: Evidence from an intertidal limpet. Journal of Thermal Biology, 57, 92-100.

Witharana, C., LaRue, M. A., & Lynch, H. J. (2016). Benchmarking of data fusion algorithms in support of earth observation based Antarctic wildlife monitoring. ISPRS Journal of Photogrammetry and Remote Sensing, 113, 124-143.

Karimi, R., Vacchi-Suzzi, C., & Meliker, J. R. (2016). Mercury exposure and a shift toward oxidative stress in avid seafood consumers. Environmental research, 146, 100-107.

Chang, E. K., Ma, C. G., Zheng, C., & Yau, A. M. (2016). Observed and projected decrease in Northern Hemisphere extratropical cyclone activity in summer and its impacts on maximum temperature. Geophysical Research Letters, 43(5), 2200-2208.

Wang, K., del Castillo, C., Corre, E., Espinosa, E. P., & Allam, B. (2016). Clam focal and systemic immune responses to QPX infection revealed by RNA-seq technology. BMC genomics, 17(1), 1.

Choi, J., Son, S. W., Ham, Y. G., Lee, J. Y., & Kim, H. M. (2016). Seasonal-to-interannual prediction skills of near-surface air temperature in the CMIP5 decadal hindcast experiments. Journal of Climate, (2016).

Giner, J. L., Ceballos, H., Tang, Y. Z., & Gobler, C. J. (2016). Sterols and Fatty Acids of the Harmful Dinoflagellate Cochlodinium polykrikoides. Chemistry & biodiversity, 13(2), 249-252.

O’Leary, S. J., Martinez, C. M., Baumann, H., Abercrombie, D. L., Poulakis, G. R., Murray, C. H., … & Chapman, D. D. (2016). Population genetics and geometric morphometrics of the key silverside, Menidia conchorum, a marine fish in a highly-fragmented, inland habitat. Bulletin of Marine Science.

Espinosa, E. P., Cerrato, R. M., Wikfors, G. H., & Allam, B. (2016). Modeling food choice in the two suspension-feeding bivalves, Crassostrea virginica and Mytilus edulis. Marine Biology, 163(2), 1-13.

Ladino, L.A., Yakobi-Hancock, J.D., Kilthau, W.P., Mason, R.H., Si, M., Li, J., Miller, L.A., Schiller, C.L., Huffman, J.A., Aller, J.Y. and Knopf, D.A., 2016. Addressing the ice nucleating abilities of marine aerosol: A combination of deposition mode laboratory and field measurements. Atmospheric Environment.

Volkenborn N., Woodin S.A., Wethey D.S., Polerecky L. (2016) Bioirrigation in marine sediments. Reference Module in Earth Systems and Environmental Sciences. DOI: 10.1016/B978-0-12-409548-9.09525-7

Cahill, A. E., & Levinton, J. S. (2016). Genetic differentiation and reduced genetic diversity at the northern range edge of two species with different dispersal modes. Molecular ecology, 25(2), 515-526.

Pinaud, S., Portela, J., Duval, D., Nowacki, F.C., Olive, M.A., Allienne, J.F., Galinier, R., Dheilly, N.M., Kieffer-Jaquinod, S., Mitta, G. and Théron, A., 2016. A Shift from Cellular to Humoral Responses Contributes to Innate Immune Memory in the Vector Snail Biomphalaria glabrata. PLoS Pathog, 12(1), p.e1005361.

Hattenrath-Lehmann, T. K., Zhen, Y., Wallace, R. B., Tang, Y. Z., & Gobler, C. J. (2016). Mapping the distribution of cysts from the toxic dinoflagellate, Cochlodinium polykrikoides, in bloom-prone estuaries using a novel fluorescence in situ hybridization assay. Applied and environmental microbiology, 82 (4):1114-1125; 10.1128/AEM.03457-15 FEB 2016

Liu, P., Zhang, Q., Zhang, C., Zhu, Y., Khairoutdinov, M., Kim, H. M., … & Zhang, M. (2016). A Revised Real-Time Multivariate MJO Index. Monthly Weather Review, 144 (2):627-642; 10.1175/MWR-D-15-0237.1 FEB 2016

Li, Y., & Zhang, M. (2016). Cumulus over the Tibetan Plateau in the Summer Based on CloudSat-CALIPSO Data. Journal of Climate, 29 (3):1219-1230; 10.1175/JCLI-D-15-0492.1 FEB 2016.

Chapman, D. D., Feldheim, K.A., Papastamatiou, Y., Hueter, R.H. There and Back Again: A review of residency and return migrations in sharks, with implications for population structure and management. Annual Reviews in Marine Science (Available online in advance of publication).

Ashe, J., Feldheim, K.A., Fields, A., Brooks, E.J., Skomal, G., Gruber, S.H., Chapman, D. D. (In Press). Local population structure and context-dependent isolation by distance in a large coastal shark. Marine Ecology Progress Series.

Kessel, S.T., Chapman, D. D., Franks, B. R., Gedamke, T., Gruber, S. H., Newman, M.J., White, E. R., Perkins, R. G. (In Press). Predictable temperature regulated residency, movement and migration in a large, highly-mobile marine predator. Marine Ecology Progress Series.

Alpert, P. A. & Knopf, D. A. (2016). Analysis of isothermal and cooling-rate-dependent immersion freezing by a unifying stochastic ice nucleation model, Atmospheric Chemistry and Physics 16 (4), 2083-2107

Stubler, A. D., A. K. Stevens and B. J. Peterson. 2016. Using community-wide recruitment and succession patterns to assess sediment stress on Jamaican coral reefs. Journal of Experimental Marine Biology and Ecology 474: 29-38.

Giner, J. L., Ceballos, H., Tang, Y. Z., & Gobler, C. J. (2016). Sterols and Fatty Acids of the Harmful Dinoflagellate Cochlodinium polykrikoides. Chemistry & Biodiversity, 13(2), 249-252.

Espinosa, E. P., Koller, A., & Allam, B. (2016). Proteomic characterization of mucosal secretions in the eastern oyster, Crassostrea virginica. Journal of proteomics, 132, 63-76. DOI information: 10.1016/j.jprot.2015.11.018

Baines, S.B., X. Chen, S. Vogt, N.S. Fisher, B.S. Twining, and M.R. Landry. In press. Elemental content of single-celled plankton in the Costa Rica Upwelling Dome and mineral limitation of mesozooplankton. Journal of Plankton Research

Baines, S.B., X. Chen, B.S. Twining, N.S. Fisher, and M.R. Landry. In press. Factors affecting Fe and Zn contents of mesozooplankton from the Costa Rica Dome. Journal of Plankton Research

Martinez, C.M., F.J. Rohlf and M.G. Frisk (In Press). Sexual dimorphism in sister species of Leucoraja skate and its relationship to reproductive strategy and life history. Evolution & Development.

Li, H., & Colle, B. A. 2015: Future Changes in Convective Storm Days over the Northeastern United States Using Linear Discriminant Analysis Applied to CMIP5 Predictions. J. Climate. doi: http://dx.doi.org/10.1175/JCLI-D-14-00831.1.

Colle, B. A., Sienkiewicz, M. J., Archer, C., Veron, D., Veron, F., Kempton, W., & Mak, J. E. (2016). Improving the mapping and prediction of offshore wind resources (IMPOWR): Experimental overview and first results. Bulletin of the American Meteorological Society, 97(8), 1377-1390.

Pascal, L., Maire, O., Volkenborn, N., Lecroart, P., Bichon, S., de Montaudouin, X., … & Deflandre, B. (2016). Influence of the mud shrimp Upogebia pusilla (Decapoda: Gebiidea) on solute and porewater exchanges in an intertidal seagrass (Zostera noltei) meadow of Arcachon Bay: An experimental assessment. Journal of Experimental Marine Biology and Ecology, 477, 69-79.

Dunton, K. J., Jordaan, A., Secor, D. H., Martinez, C. M., Kehler, T., Hattala, K. A., … & Frisk, M. G. (2016). Age and Growth of Atlantic Sturgeon in the New York Bight. North American Journal of Fisheries Management, 36(1), 62-73.

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Espinosa, E. P., Cerrato, R. M., Wikfors, G. H., & Allam, B. (2016). Modeling food choice in the two suspension-feeding bivalves, Crassostrea virginica and Mytilus edulis. Marine Biology, 163(2), 1-13.

Martinez, C. M., Rohlf, F. J., & Frisk, M. G. (2016). Re‐evaluation of batoid pectoral morphology reveals novel patterns of diversity among major lineages. Journal of morphology, 277(4), 482-493.

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Wang, X. H., Wang, D. P., Sun, Z., He, Z., Liu, H., Guan, W., … & Bao, X. (2016). International scientists discuss impact on China’s estuarine and coastal environment by intensive anthropogenic activities–The 2nd workshop on sediment dynamics of muddy coasts and estuaries: Physics, biology and their interactions, Zhoushan, China, 23–26 October, 2015. Estuarine, Coastal and Shelf Science, 168, ii-iii.

Espinosa, E. P., Koller, A., & Allam, B. (2016). Proteomic characterization of mucosal secretions in the eastern oyster, Crassostrea virginica. Journal of proteomics, 132, 63-76.

Wang, K., Espinosa, E. P., Tanguy, A., & Allam, B. (2016). Alterations of the immune transcriptome in resistant and susceptible hard clams (Mercenaria mercenaria) in response to Quahog Parasite Unknown (QPX) and temperature. Fish & shellfish immunology, 49, 163-176.

Stubler, A. D., Stevens, A. K., & Peterson, B. J. (2016). Using community-wide recruitment and succession patterns to assess sediment stress on Jamaican coral reefs. Journal of Experimental Marine Biology and Ecology,474, 29-38.

Martinez, C. M., Rohlf, F. J. and Frisk, M. G. (2016), Sexual dimorphism in sister species of Leucoraja skate and its relationship to reproductive strategy and life history. Evolution & Development. doi: 10.1111/ede.12175

Pochron, S. (2016) Monkeys In The Garden Irven DeVore and the Revolution in the Science of Social Behavior. Smashwords.

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Rider, Tara. The Once and Future Queen: The Imagining and Reimagining of Ireland. 2016. New Trails and Beaten Paths in Celtic Studies.

Tang, S., Zhang, M., & Xie, S. (2016). An ensemble constrained variational analysis of atmospheric forcing data and its application to evaluate clouds in CAM5. Journal of Geophysical Research: Atmospheres, 121(1), 33-48.

Yee, A. K., & Padilla, D. K. (2015). Allometric Scaling of the Radula in the Atlantic Slippersnail Crepidula fornicata. Journal of Shellfish Research, 34(3), 903-907.

Bretherton, C. S., & Khairoutdinov, M. F. (2015). Convective self‐aggregation feedbacks in near‐global cloud‐resolving simulations of an aquaplanet. Journal of Advances in Modeling Earth Systems.

Supinie, T. A., Jung, Y., Xue, M., Stensrud, D. J., French, M. M., & Bluestein, H. B. (2015). Impact of VORTEX2 Observations on Analyses and Forecasts of the 5 June 2009 Goshen County, Wyoming, Supercell. Monthly Weather Review, (2015).

Bokuniewicz, H., Cochran, J. K., Garcia-Orellana, J., Rodellas, V., Daniel, J. W., & Heilbrun, C. (2015). Intertidal percolation through beach sands as a source of 224,223 Ra to Long Island Sound, New York, and Connecticut, United States. Journal of Marine Research, 73(5), 123-140.

Baumann, H., Wells, R. J. D., Rooker, J. R., Zhang, S., Baumann, Z., Madigan, D. J., … & Fisher, N. S. (2015). Combining otolith microstructure and trace elemental analyses to infer the arrival of juvenile Pacific bluefin tuna in the California current ecosystem. ICES Journal of Marine Science: Journal du Conseil, 72(7), 2128-2138.

Allam, B., and Raftos, D., Immune responses to infectious diseases in bivalves, Journal of Invertebrate Pathology 131: 121-136, ISSN 0022-2011,http://dx.doi.org/10.1016/j.jip.2015.05.005.

Allam, B., & Espinosa, P. E. (2015, April). The multiple, central, roles of mucosal secretions in marine bivalves. In INTEGRATIVE AND COMPARATIVE BIOLOGY (Vol. 55, pp. E4-E4). JOURNALS DEPT, 2001 EVANS RD, CARY, NC 27513 USA: OXFORD UNIV PRESS INC.

McCann, M. J., & Padilla, D. K. (2015). Effects of a patchy food environment across life history stages. Journal of Experimental Marine Biology and Ecology, 472, 135-141.

Alpert, P. A., & Knopf, D. A. (2015). Analysis of isothermal and cooling rate dependent immersion freezing by a unifying stochastic ice nucleation model. Atmospheric Chemistry and Physics Discussions, 15(9), 13109-13166.

Fritts, D. C., Wang, L., Geller, M. A., Lawrence, D. A., Werne, J., & Balsley, B. B. (2015). Numerical Modeling of Multi-Scale Dynamics at a High Reynolds Number: Instabilities, Turbulence, and an Assessment of Ozmidov and Thorpe Scales. Journal of the Atmospheric Sciences, (2015).

Baines, S. B., Chen, X., Twining, B. S., Fisher, N. S., & Landry, M. R. (2015). Factors affecting Fe and Zn contents of mesozooplankton from the Costa Rica Dome. Journal of Plankton Research, fbv098.

Khairoutdinov, M., & Zhou, X. (2015, April). Changes in sub-daily precipitation extremes in a global climate model with super-parameterization under CO2 warming. In EGU General Assembly Conference Abstracts (Vol. 17, p. 7931).

Gribble, M. O., Karimi, R., Feingold, B. J., Nyland, J. F., O’Hara, T. M., Gladyshev, M. I., & Chen, C. Y. (2015). Mercury, selenium and fish oils in marine food webs and implications for human health. Journal of the Marine Biological Association of the United Kingdom, 1-17.

Zhou, X-H, D-P. Wang, and D. Chen, 2015b. Validating satellite altimeter measurements of internal tides with long-term TAO/TRITON buoy observations at 2oS-156oE. Geophy. Res. Lett., 42, doi:10.1002/2015GL063669.

Wang L; Han J, Zhu Y, Zhou R, Jaye C, Liu H, Li Z-Q, Taylor G, Fischer D, Appenzelle, J, Wong SS. 2015. Probing the dependence of electron transfer on size and coverage in carbon nanotube-quantum dot heterostructures. J Phys Chem 119: 26327–26338

Chao Ye, Weihua Qiao, Xiaobin Yu, Xiaojun Ji, He Huang, J. L. Collier, Liming Liu. 2015. Reconstruction and analysis of the genome-scale metabolic model ofschizochytrium limacinum SR21 for docosahexaenoic acid production. BMC Genomics 16 :799 (11pp). DOI 10.1186/s12864-015-2042-y

Mars Brisbin M, McElroy A, Pales Espinosa E, Allam B. 2015. Antimicrobial activity in the cuticle of the American lobster, Homarus americanus. Fish and Shellfish Immunology. 44: 542-546.

Lin, Yanluan Lin, Ming Zhao and Minghua Zhang, 2015: Tropical cyclone rainfall area controlled by relative sea surface temperature, Nature Communications 6, 6591m doi:10.1038/ncomms7591

Ridley, H.E., Y. Asmerom, J.U.L. Baldini, S.F.M. Breitenbach, V.V. Aquino, K.M. Prufer, Brendan J. Culleton, V. Polyak, F.A. Lechleitner, D.J. Kennett, M. Zhang, N. Marwan, C.G. Macpherson, L.M. Baldini, T. Xiao, J.L. Peterkin, J. Awe, G.H. Haug, 2015: Aerosol forcing of the position of the intertropical convergence zone since AD 1550. Nat. Geosci., 8 (2015)http://dx.doi.org/10.1038/ngeo2353

Zhang, M., 2015. Coupled Ocean-Atmosphere Models: Physical Processes. P144-152, In: Gerald R.North (editor-in-chief), John Pyle and Fuqing Zhang (editors). Encyclopedia of Atmospheric Sciences, 2nd edition, Vol 4, pp. 144–152. ISBN: 9780123822253, 2998pp, Copyright © 2015 Elsevier Ltd.

Walcker, R., E. J. Anthony, C. Cassou, R.C. Aller, A. Gardel, C. Proisy, J.-M. Martinez, and F. Fromard, 2015, Fluctuations in the extent of mangroves driven by multi-decadal changes in North Atlantic waves. J. Biogeogr., 42, 2209-2219.

A. J. Illingworth, H. W. Barker, A. Beljaars, M. Ceccaldi, H. Chepfer, N. Clerbaux, J. Cole, J. Delanoë, C. Domenech, D. P. Donovan, S. Fukuda, M. Hirakata, R. J. Hogan, A. Huenerbein, P. Kollias, T. Kubota, T. Nakajima, T. Y. Nakajima, T. Nishizawa, Y. Ohno, H. Okamoto, R. Oki, K. Sato, M. Satoh, M. W. Shephard, A. Velázquez-Blázquez, U. Wandinger, T. Wehr, and G.-J. van Zadelhoff, (2015), The EarthCARE Satellite: The Next Step Forward in Global Measurements of Clouds, Aerosols, Precipitation, and Radiation. Bull. Amer. Meteor. Soc., 96, 1311–1332. doi: http://dx.doi.org/10.1175/BAMS-D-12-00227.1

Robert Wood, Matthew Wyant, Christopher S. Bretherton, Jasmine Rémillard, Pavlos Kollias, Jennifer Fletcher, Jayson Stemmler, Simone de Szoeke, Sandra Yuter, Matthew Miller, David Mechem, George Tselioudis, J. Christine Chiu, Julian A. L. Mann, Ewan J. O’Connor, Robin J. Hogan, Xiquan Dong, Mark Miller, Virendra Ghate, Anne Jefferson, Qilong Min, Patrick Minnis, Rabindra Palikonda, Bruce Albrecht, Ed Luke, Cecile Hannay, and Yanluan Lin, (2015), Clouds, Aerosols, and Precipitation in the Marine Boundary Layer: An Arm Mobile Facility Deployment.Bull. Amer. Meteor. Soc., 96, 419–440. doi: http://dx.doi.org/10.1175/BAMS-D-13-00180.1

Chandra, A., Zhang, C., Kollias, P., Matrosov, S., and Szyrmer, W, (2015), Automated rain rate estimates using the Ka-band ARM zenith radar (KAZR), Atmos. Meas. Tech., 8, 3685-3699, doi:10.5194/amt-8-3685-2015.

Battaglia, A. and P. Kollias, (2015), Error Analysis of a Conceptual Cloud Doppler Stereoradar with Polarization Diversity for Better Understanding Space Applications. J. Atmos. Oceanic Technol., 32, 1298–1319. doi: http://dx.doi.org/10.1175/JTECH-D-14-00015.1

Maximilian Maahn, Ulrich Löhnert, Pavlos Kollias, Robert C. Jackson, and Greg M. McFarquhar, (2015), Developing and Evaluating Ice Cloud Parameterizations for Forward Modeling of Radar Moments Using in situ Aircraft Observations. J. Atmos. Oceanic Technol., 32, 880–903. doi: 10.1175/JTECH-D-14-00112.1

Gail Skofronick-Jackson, David Hudak, Walter Petersen, Stephen W. Nesbitt, V. Chandrasekar, Stephen Durden, Kirstin J. Gleicher, Gwo-Jong Huang, Paul Joe, Pavlos Kollias, Kimberly A. Reed, Mathew R. Schwaller, Ronald Stewart, Simone Tanelli, Ali Tokay, James R. Wang, and Mengistu Wolde, (2015), Global Precipitation Measurement Cold Season Precipitation Experiment (GCPEX): For Measurement’s Sake, Let It Snow. Bull. Amer. Meteor. Soc., 96, 1719–1741. doi: http://dx.doi.org/10.1175/BAMS-D-13-00262.1

Mechem, D. B., Giangrande, S. E., Wittman, C. S., Borque, P., Toto, T. and Kollias, P. (2015), Insights from modeling and observational evaluation of a precipitating continental cumulus event observed during the MC3E field campaign. J. Geophys. Res. Atmos., 120, 1980–1995. doi: 10.1002/2014JD022255.

Gledhill, D.K., M.M. White, J. Salisbury, H. Thomas, I. Mlsna, M. Liebman, B. Mook, J. Grear, A.C. Candelmo, R.C. Chambers, C.J. Gobler, C.W. Hunt, A.L. King, N.N. Price, S.R. Signorini, E. Stancioff, C. Stymiest, R.A. Wahle, J.D. Waller, N.D. Rebuck, Z.A. Wang, T.L. Capson, J.R. Morrison, S.R. Cooley, and S.C. Doney. (2015). Ocean and coastal acidification off New England and Nova Scotia. Oceanography 28(2), 182–197, http://dx.doi.org/10.5670/oceanog.2015.41

Feng, S., Li, Z., Liu, Y., Lin, W., Zhang, M., Toto, T., … & Endo, S. (2015). Development of fine‐resolution analyses and expanded large‐scale forcing properties: 2. Scale awareness and application to single‐column model experiments. Journal of Geophysical Research: Atmospheres.

Michael J McCann and Dianna K Padilla 2015. Effects of a patchy food environment across life history stages. Journal of Experimental Marine Biology and Ecology 472: 135-141.

Alexander Y. Karatayev, Demetrio Boltovskoy, Lyubov Burlakova and Dianna K. Padilla 2015. Parallels and contrasts between Limnoperna fortunei and species of Dreissena. In: Limnoperna fortunei: the ecology, distribution and control of a swiftly spreading invasive fouling mussel, Demetrio Boltovskoy, Editor. Springer.

Alexander Y. Karatayev, Lyubov E. Burlakova, Sergey E. Mastitsky, and Dianna K. Padilla 2015. Predicting the spread of aquatic invaders: insight from 200 years of invasion by zebra mussels. Ecological Applications 25: 430-440.

Alexander Y. Karatayev, Lyubov E. Burlakova and Dianna K. Padilla. 2015. Zebra versus quagga mussels: a review of their spread, population dynamics, and ecosystem impacts. Hydrobiologia 746: 97-112.

Chapman, D. D., Feldheim, K. A., Papastamatiou, Y. P., & Hueter, R. E. (2015). There and Back Again: A Review of Residency and Return Migrations in Sharks, with Implications for Population Structure and Management. Annual review of marine science, 7, 547-570.

Ashe, J. L., Feldheim, K. A., Fields, A. T., Reyier, E. A., Brooks, E. J., O’Connell, M. T., … & Chapman, D. D. (2015). Local population structure and context-dependent isolation by distance in a large coastal shark. Mar Ecol Prog Ser, 520, 203-216.

Watanabe, Y. Y., Goldman, K. J., Caselle, J. E., Chapman, D. D., & Papastamatiou, Y. P. (2015). Comparative analyses of animal-tracking data reveal ecological significance of endothermy in fishes. Proceedings of the National Academy of Sciences, 201500316.

Brooks, E. J., Brooks, A. M., Williams, S., Jordan, L. K., Abercrombie, D., Chapman, D. D., … & Grubbs, R. D. (2015). First description of deep-water elasmobranch assemblages in the Exuma Sound, The Bahamas. Deep Sea Research Part II: Topical Studies in Oceanography, 115, 81-91.

Fields, A. T., Feldheim, K. A., Poulakis, G. R., & Chapman, D. D. (2015). Facultative parthenogenesis in a critically endangered wild vertebrate. Current Biology, 25(11), R446-R447.

Tettelbach, S. T., B. J. Peterson, J. M. Carroll, B. T. Furman, S. W. T. Hughes, J. Havelin, J. R. Europe, D. M. Bonal, A. J. Weinstock and C. F. Smith. 2015. Aspiring to an Alternative Stable State: Rebuilding of Bay Scallop Populations and Fisheries Following Intensive Restoration. Marine Ecology Progress Series 529: 121-136.

Berry, D. L., J. A. Goleski, F. Koch, C. C. Wall, B. J. Peterson, O. R. Anderson and C. J. Gobler. 2015. Shifts in Cyanobacterial Strain Dominance during Onset of Harmful Algal Blooms in Florida Bay, USA. Molecular Ecology 70: 361-371.

Furman, B. T., L. J. Jackson, E. Bricker and B. J. Peterson. 2015. Sexual recruitment in Zostera marina: a patch to landscape-scale investigation. Limnology and Oceanography 60(2): 584-599.

Carroll, J. M., L. L. Jackson and B. J. Peterson. 2015. The effect of increasing habitat complexity on bay scallop survival in the presence of different decapod crustacean predators. Estuaries and Coasts 38: 1569-1579

Stubler, A. D., A. R. Duckworth and B. J. Peterson. 2015. Sedimentation affects sponge abundance, diversity and distribution on Jamaican coral reefs. Marine Pollution Bulletin 96: 261-270.

Stubler, A. D., B. T. Furman and B. J. Peterson. 2015. Sponge erosion under acidification and warming scenarios: differential impacts on living and dead coral. Global Change Biology 21(11): 4006-4020.

Furman, B. T. and B. J. Peterson. 2015. Sexual Recruitment in Zostera marina: Progress toward a Predictive Model. PLoS ONE 10(9): e0138206.

Trathan, P. N., P. García-Borboroglu, D. Boersma, C.-A. Bost, R. J. M. Crawford, G. T. Crossin, R. J. Cuthbert, P. Dann, L. S. Davis, S. De la Puente, U. Ellenberg, H.J. Lynch, T. Mattern, K. Pütz, P. J. Seddon, W. Trivelpiece, B. Wienecke. 2015. Assessing human impacts on marine systems, especially upon penguin species: how much do we care? Conservation Biology 29(1): 31-41.

Casanovas, P.V., R. Naveen, S. Forrest, J. Poncet, and H.J. Lynch. 2015. A comprehensive coastal seabird survey maps out the front lines of ecological change on the Western Antarctic Peninsula. Polar Biology 38: 927-940.

LaRue, M., G. Kooyman, H.J. Lynch, and P. Fretwell. 2015. Emigration in emperor penguins: Implications for interpretation of long-term studies. Ecography 38: 114-120.

Zhou, X., P. Kollias and E. Lewis, (2015), Clouds, Precipitation, and Marine Boundary Layer Structure during the MAGIC Field Campaign. J. Climate, 28, 2420–2442. doi: http://dx.doi.org/10.1175/JCLI-D-14-00320.1

Zermeno, D., C. Zhang, P. Kollias and H. Kalesse, (2015), Shallow Cloud Moistening in MJO and non-MJO Large-Scale Convective Events over the ARM Manus Site. J. Atmos. Sciences, doi: http://dx.doi.org/10.1175/JAS-D-14-0322.1

Lamer, K., P. Kollias, and L. Nuijens (2015), Observations of the variability of shallow trade wind cumulus cloudiness and mass flux. J. Geophys. Res. Atmos., 120, 6161–6178. doi: 10.1002/2014JD022950.

Marcus van Lier-Walqui, Ann Fridlind, Andrew Ackerman, Scott Collis, Jonathan Helmus, Donald MacGorman Kirk North, Pavlos Kollias and Derek Posselt, (2015), Polarimetric radar signatures of deep convection: characteristics of KDP columns observed during MC3E. Monthly Weather Review 2015; e-View doi: 10.1175/MWR-D-15-0100.1

Jiwen Fan, Yi-Chin Liu, Kuan-Man Xu, Kirk North, Scott Collis, Xiquan Dong, Guang J. Zhang, Qian Chen, Kollias Pavlos, and Steven J. Ghan, (2015), Improving Representation of Convective Transport for Scale-Aware Parameterization – Part I: Convection and Cloud Properties Simulated with Spectral-Bin and Bulk Microphysics. Accepted, Journal of Geophysical Research – Atmospheres

Kneifel, S., A.von Lerber, J. Tiira, D. Moisseev, P. Kollias, and J. Leinonen (2015), Observed relations between snowfall microphysics and triple-frequency radar measurements. J. Geophys. Res. Atmos., 120, 6034–6055. doi:10.1002/2015JD023156.

Jensen, M., et al., (2015), The Midlatitude Continental Convective Clouds Experiment (MC3E). Accepted to the Bulletin of the American Meteorological Society

Gownaris NJ, Pikitch EK, Ojwang WO, Michener R, Kaufman L (2015) Predicting Species’ Vulnerability in a Massively Perturbed System: The Fishes of Lake Turkana, Kenya. PLoS ONE 10(5): e0127027. doi:10.1371/journal.pone.0127027

Lin, W., Liu, Y., Vogelmann, A. M., Fridlind, A., Endo, S., Song, H., … & Zhang, M. (2015). RACORO Continental Boundary Layer Cloud Investigations. Part III: Separation of Parameterization Biases in Single‐Column Model CAM5 Simulations of Shallow Cumulus. Journal of Geophysical Research: Atmospheres.

Price, R. E., LaRowe, D. E., Italiano, F., Savov, I., Pichler, T., & Amend, J. P. (2015). Subsurface hydrothermal processes and the bioenergetics of chemolithoautotrophy at the shallow-sea vents off Panarea Island (Italy). Chemical Geology, 407, 21-45.

Engel, B.E; Hallock, P; Price, R.E.; and Pichler, T. (2015). Shell dissolution in larger benthic foraminifers exposed to pH and temperature extremes: Results from an in situ experiment. Journal of Foraminiferal Research. 45 (2).

Dasgupta, S., Huang, I.J., and McElroy A. E. 2015. Hypoxia enhances the toxicity of Corexit EC9500A and CEWAFs prepared with Louisiana Sweet Crude Oil (MD-242) to sheepshead minnow (Cyprinodon variegatus) larvae. PLoS One. DOI:10.1371/journal.pone.0128939.

Romany, J.S., McElroy A.E., and Fast, M. 2015. Measures of immune system status in young-of-the-year winter flounder (Pseudopleuronectes americanus) from Long Island coastal bays. J. Fish. Biol. 86:148-161.

K. Park*, L. K. Emmons, Z. Wang and J. E. Mak, Joint Application of Concentration and δ18O to Investigate the Global Atmospheric CO Budget, Atmosphere, 6, 547-578; doi:10.3390/atmos6050547, 2015.

K. Park*, Z. Wang, L. K. Emmons, J. E. Mak, Variation of atmospheric CO, δ13C and δ18O at high northern latitude during 2004-2009: observations and model simulations, J. Geophys.Res.-Atmos., 120, 11,024–11,036, doi:10.1002/2015JD023191, 2015.

P.K. Misztal et al., inc. J.E. Mak, Atmospheric benzenoid emissions from plants rival those from fossil fuel, Nature Sci. Rep., 5, 12064, 2015.

L. Su*, E. G. Patton, J. Vilà-Guerau de Arellano, A. B. Guenther, L. Kaser, B. Yuan, F. Xiong, P. B. Shepson, L. Zhang, D. O. Miller, W. H. Brune, K. Baumann, E. Edgerton, A. Weinheimer, and J. E. Mak, Understanding isoprene photo-oxidation using observations and modeling over a subtropical forest in the Southeast US, Atmos. Chem. Phys. Discuss., 15, 31621-31663, doi:10.5194/acpd-15-31621-2015, 2015.

Thalman, R., Baeza-Romero, M. T., Ball, S. M., Borrás, E., Daniels, M. J. S., Goodall, I. C. A., Henry, S. B., Karl, T., Keutsch, F. N., Kim, S., Mak, J., Monks, P. S., Muñoz, A., Orlando, J., Peppe, S., Rickard, A. R., Ródenas, M., Sánchez, P., Seco, R., Su, L., Tyndall, G., Vázquez, M., Vera, T., Waxman, E., and Volkamer, R.: Instrument intercomparison of glyoxal, methyl glyoxal and NO2 under simulated atmospheric conditions, Atmos. Meas. Tech., 8, 1835-1862, doi:10.5194/amt-8-1835-2015, 2015.

Yoo, C., S. Park, D. Kim, J. H. Yoon, and H. M. Kim, 2015: Boreal winter MJO teleconnection in the Community Atmosphere Model version 5 with the Unified Convection parameterization, J. Climate, 28, 8135-8150

Thorne, L. H., E. L. Hazen, S.J. Bograd, D.G. Foley, M.G. Conners, M.A. Kappes, H. M. Kim, Y. Tremblay, D.P. Costa, and S.A. Shaffer, 2015: Foraging behavior links climate variability and reproduction in North Pacific albatrosses, Movement Ecology, 3:27, DOI: 10.1186/s40462-015-0050-9

Yu, J. 2015 Erratum for “Approximations of the Dispersion Relationship of Water Waves” by J. Yu. J. Eng. Mech., 141(7) . doi: 10.1061/(ASCE)EM.1943-7889.0000941

Yu, J. and Chen, S. 2015 Hydrodynamic instability mechanism for rip currents. Studies in Applied Mathematics. 135: 196-223. doi: 10.1111/sapm.12074

Weidman, P., Herczynski, A., Yu, J. and Howard, L. N. 2015 Experiments on normal modes in a tank with corrugated bottom. J. Fluid Mech., 777: 122-150. doi:10.1017/jfm.2015.318

Carlisle AB, Goldman KJ, Litvin SY, Madigan DJ, Bigman JS, Swithenbank AM, Kline Jr TC & BA Block. 2015. Stable isotope analysis of salmon shark vertebrae reveals ontogenetic changes in habitat in a pelagic shark. Proceedings Royal Society B 282: 20141446.

Madigan DJ. 2015. Understanding bluefin migration using intrinsic tracers in tissues in T. Kitagawa & S. Kimura (Eds.), Biology & Ecology of Bluefin Tuna. Boca Raton, FL: CRC Press.

Carlisle AB, Litvin SY, Hazen EL, Madigan DJ, Goldman KJ, Lea RN & BA Block. 2015. Reconstructing habitat use by juvenile salmon sharks links upwelling to strandings in the California Current. Marine Ecology Progress Series 525: 217-228.

Lyons K, Preti A, Madigan DJ, Wells RJD, Blasius ME, Snodgrass OE, Kacev D, Harris JD, Dewar H, Kohin S, MacKenzie K & CG Lowe. 2015. Insights into the life history and ecology of a large shortfin mako shark (Isurus oxyrinchus) captured in southern California. Journal of Fish Biology. DOI:10.1111/jfb.12709.

Madigan DJ, Brooks EJ, Bond ME, Gelsleichter J, Howey LA, Abercrombie DL, Brooks A & DD Chapman. 2015. Diet shift and associated site-fidelity of oceanic whitetip sharks (Carcharhinus longimanus) along the edge of the Great Bahama Bank. Marine Ecology Progress Series 529: 185-197. DOI: 10.3354/meps11302.

Madigan DJ, Carlisle AB, Gardner LD, Jayasundara N, Micheli F, Schaefer KM, Fuller DW & BA Block. 2015. Assessing niche width of endothermic fish from genes to ecosystem. PNAS 112(27): 8350-8355.

Harris, C.M., K. Lorenz, L.D.C. Fishpool, B. Lascelles, J. Cooper, N. Coria, J.P. Croxall, L.M. Emmerson, R. Fijn, P. Jouventin, M.A. LaRue, Y. Le Maho, H.J. Lynch, R. Naveen, S. Poncet, R.A. Phillips, C.J. Southwell, J.A. van Franeker, H. Weimerskirch, B. Wienecke, and E.J. Woehler. 2015. Important Bird Areas in Antarctica Summary 2015. BirdLife International and Environmental Research & Assessment Ltd., Cambridge.

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Li, H., and B.A. Colle, 2014: Multidecadal changes in the frequency and ambient conditions of warm season convective storms over the northeastern U.S. J. Climate, 27, 7285-7300.

Colle, B.A. 2014: Cold Air Damming. In: Gerald R. North (editor-in-chief), John Pyle and Fuqing Zhang (editors). Encyclopedia of Atmospheric Sciences, 2nd edition, Vol 4, pp. 62–68.

Rountos, K.J., Tang, Y.Z., Cerrato, R.M., Gobler, C.J., Pikitch, E.K. (2014). Toxicity of the harmful dinoflagellate Cochlodinium polykrikoides to early life stages of three estuarine forage fish. Mar Ecol Prog Ser 505: 81-94

McCauley, M. M., Cerrato, R. M., Sclafani, M., & Frisk, M. G. (2014). Diel Behavior in White Perch Revealed using Acoustic Telemetry. Transactions of the American Fisheries Society, 143(5): 1330-1340.

McNamara, M.E., D.J. Lonsdale, and R.M. Cerrato (2014). Role of eutrophication in structuring planktonic communities in the presence of the ctenophore Mnemiopsis leidyi. Mar. Ecol. Prog. Ser. 510: 151-165

Collier, J.L., S.P. Fitzgerald, L.A. Hice, M.G. Frisk, and A.E. McElroy (2014) A New PCR-Based Method Shows That Blue Crabs (Callinectes sapidus (Rathbun)) Consume Winter Flounder (Pseudopleuronectes americanus (Walbaum)). Plos One 9.

Sagarese, S.R., M.G. Frisk, T.J. Miller, K.A. Sosebee, J.A. Musick, and P.J. Rago (2014) Influence of environmental, spatial, and ontogenetic variables on habitat selection and management of spiny dogfish in the Northeast (US) shelf large marine ecosystem. Canadian Journal of Fisheries and Aquatic Sciences 71(4), 567-580.

Skyler R. Sagarese, Michael G. Frisk, Robert M. Cerrato, Kathy A. Sosebee, John A. Musick, and Paul J. Rago (2014). Application of generalized additive models to examine ontogenetic and seasonal distributions of spiny dogfish (Squalus acanthias) in the Northeast (US) shelf large marine ecosystem. Can J. Fish. Aq. Sci. 71: 847-877.

Yuan, W., Geller, M. A. and Love, P. T. (2014), ENSO influence on QBO modulations of the tropical tropopause. Q.J.R. Meteorol. Soc., 140: 1670-1676. doi: 10.1002/qj.2247

Frisk, M.G., Jordaan, A., Miller, T.J. (2014) Moving beyond the current paradigm in marine population connectivity: are adults the missing link? Fish and Fisheries 15, 242-254.

Sheffield, J., et al. (including E.K.M. Chang), 2014: Regional Climate Processes and Projections for North America: CMIP3/CMIP5 differences, attribution and outstanding issues. NOAA Technical Report OAR CPO-2. Available at http://docs.lib.noaa.gov/noaa_documents/OAR/CPO/TR_OAR_CPO/CPO-2.pdf.

Maloney, E.D., S.J. Camargo, E. Chang, et al., 2014: North American climate in CMIP5 experiments: Part III: Assessment of twenty-first-century projections, J. Climate, 27, 2230-2270, doi: 10.1175/JCLI-D-13-00273.1.

Feng, J., Liu, P., Chen, W., & Wang, X. (2014). Contrasting Madden–Julian Oscillation activity during various stages of EP and CP El Niños. Atmospheric Science Letters.

Liu, P. (2014). MJO structure associated with the higher-order CEOF modes. Climate Dynamics, 1-12.

Bluestein, Howard B., J. B. Houser, M. M. French, J. C. Snyder, G. D. Emmitt, I. PopStefanija, C. A. Baldi, and R. T. Bluth, (2014). Observations of the boundary layer near tornadoes and in supercells using a mobile, co-located, pulsed Doppler lidar and radar. J. Atmos. Oceanic Technol., 31, 302-325.

French, Michael M., H. B. Bluestein, I. PopStefanija, C. A. Baldi, and R. T. Bluth, (2014). Mobile, phased-array, Doppler radar observations of tornadoes at X band. Mon. Wea. Rev., 142, 1010-1036.

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Garcia-Orellana, J., Cochran, J. K., Bokuniewicz, H., Daniel, J. W. R., Rodellas, V., & Heilbrun, C. (2014). Evaluation of 224Ra as a tracer for submarine groundwater discharge in Long Island Sound (NY). Geochimica et Cosmochimica Acta 114, 314-330.

Koch, F., Burson, A., Tang, Y. Z., Collier, J. L., Fisher, N. S., Sañudo-Wilhelmy, S., & Gobler, C. J. (2014). Alteration of plankton communities and biogeochemical cycles by harmful Cochlodinium polykrikoides (Dinophyceae) blooms. Harmful Algae, 33(0), 41-54. doi: http://dx.doi.org/10.1016/j.hal.2014.01.003

Souders, M. B., Colle, B. A., & Chang, E. K. 2014: The Climatology and Characteristics of Rossby Wave Packets Using a Feature-Based Tracking Technique. Monthly Weather Review, 142(10), 3528-3548.

Souders, M.B., B.A. Colle, and E.K.M. Chang, 2014: A description of an automated approach for feature-based tracking of Rossby wave packets. Mon. Wea. Rev., 142, 3505-3527, doi:10.1175/MWR-D-1300317.1.

Chang, E.K.M., 2014: Impacts of background field removal on CMIP5 projected changes in Pacific winter cyclone activity, J. Geophys. Res. Atmos., 119, 4626-4639, doi:10.1002/2013JD020746.

Xia, X.*, and E.K.M. Chang, 2014: Diabatic damping of zonal index variations, J. Atmos. Sci., 71, 3090-3105, doi:10.1175/JAS-D-13-0292.1.

Doherty, O. M., Riemer, N., & Hameed, S. (2014). Role of the convergence zone over West Africa in controlling Saharan mineral dust load and transport in the boreal summer. Tellus B, 66.

Wallace, R. B., Baumann, H., Grear, J. S., Aller, R. C., & Gobler, C. J. (2014). Coastal ocean acidification: The other eutrophication problem. Estuarine, Coastal and Shelf Science.

del Castillo C, Allam B. (2014). A comparative genomics analysis of the T3SS2α pathogenicity island of Vibrio parahaemolyticus. Journal of Shellfish Research 33(2): 550

Wang K, Pales Espinosa E, Allam B. (2014). Effect of “heat shock” treatments on QPX disease in the hard clam, Mercenaria mercenaria. Journal of Shellfish Research 33(2): 661.

Wang K, Del Castillo C, Pales Espinosa E, Allam B. (2014). Clam focal and systemic immune responses to QPX revealed by RNA-Seq technology. Journal of Shellfish Research 33(2): 661.

Rubin E, Pales Espinosa E, Koller A, Allam B. (2014). Extracellular proteins in quahog parasite unknown (QPX) mucoid secretion. Journal of Shellfish Research 33(2): 648.

Rubin E, Tanguy A, Pales Espinosa E, Allam B. (2014). Differential gene expression in quahog parasite unknown (QPX) in response to clam factors and transcriptomic profiling of five QPX isolates. Journal of Shellfish Research 33(2): 647-648.

Keeling PJ, Burki F, Wilcox HM, Allam B, Allen EE, et al. (2014). The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the functional diversity of eukaryotic life in the oceans through transcriptome sequencing. PLoS Biology, 12(6), e1001889.

Rosa M, Ward E, Shumway S, Wikfors G, Pales Espinosa E, Allam B. (2014). Examining seasonal shifts in retention efficiency and mucosal composition in the blue mussel Mytilus edulis. Journal of Shellfish Research 33(2): 647.

Allam B., Corre E, Pales Espinosa E. (2014). Pallial mucus of Crassostrea virginica regulates the expression of putative virulence genes of its pathogen Perkinsus marinus. Journal of Shellfish Research 33(2): 586.

Allam, B., Pales Espinosa, E., Tanguy, A., Jeffroy, F., Le Bris, C., Paillard, C. 2014. Transcriptional changes in manila clam (Ruditapes philippinarum) in response to brown ring disease. Fish and Shellfish immunology. 41, 2-11.

Rubin E, Tanguy A, Perrigault M, Pales Espinosa E, Allam B. (2014). Characterization of the transcriptome and temperature-induced differential gene expression of in quahog parasite unknown QPX, the thraustochytrid parasite of hard clams. BMC Genomics 15: 245.

Pales Espinosa E, Koller T, Allam B. (2014). Shotgun proteomic characterization of the pallial mucus of the oyster Crassostrea virginica. Journal of Shellfish Research 33(2): 640.

Dahl S, Barnes D, Allam B. (2014). QPX disease relationships with environmental parameters monitored over a decade in a Raritan Bay (NY) hard clam fishery. Journal of Shellfish Research 33(2): 599-600.

Pales Espinosa E., Allam B. (2014). Food quality and season affect the expression of the mucosal lectin MeML and food sorting abilities in the blue mussel Mytilus edulis. Journal of Shellfish Research 33(2): 639-640.

Pales Espinosa E., Corre E, Allam B. (2014). Pallial mucus of Crassostrea virginica regulates the expression of putative virulence genes of its pathogen Perkinsus marinus. International Journal for Parasitology 44: 305-317.

Beaupré, S. R. (2014). Chapter 6: The isotopic composition of marine DOC, in Biogeochemistry of Marine Dissolved Organic Carbon, 2nd Edition, edited by D. A. Hansell and C. A. Carlson, pp. 335-368, Academic Press, U.K.

Geers, T.M., E.K. Pikitch, M.G. Frisk (In Press-online February 5, 2014). An Original Model of the Northern Gulf of Mexico using Ecopath with Ecosim and its Implications for the Effects of Fishing on Ecosystem Structure and Maturity. Deep Sea Research Part II: Topical Studies in Oceanography.

Berg, L. K., J. D. Fast, J. C. Barnard, S. P. Burton, B. Cairns, D. Chand, J. M. Comstock, S. Dunagan, R. A. Ferrare, C. J. Flynn, J. W. Hair., C. A. Hostetler., J. Hubbe., R. Johnson, E. I. Kassianov, C. D. Kluzek, P. Kollias, K. Lamer, F. Mei, M. A. Miller, J. Michalsky, I. Ortega, R R. Rogers., P. B. Russell, J. Redemann, A. J. Sedlacek III, M. Segal-Rosenheimer, B. Schmid, J. E. Shilling, Y. Shinozuka, S. R. Springston, J. Tomlinson, M. Tyrrell, J. M. Wilson, R. Volkamer, A. Zelenyuk, and C. M. Berkowitz, (2013), The Two-Column Aerosol Project: Phase I Overview and Impact of Elevated Aerosol Layers on Aerosol Optical Depth, Accepted to the Journal of Geophysical Research

Taylor, D. (2013). The Log from the Sea of Cortez: A Poem Series. San Antonio, TX: Wings Press.

Taylor, D. (2013). The Log from the Sea of Cortez: A Poem Series. San Antonio, TX: Wings Press.

Archer, C. L., Colle, B. C., Monache, L., Dvorak, M. J., Lundquist, J., Bailey, B. H., … & Zack, J. 2013: Meteorology for coastal/offshore wind energy in the United States: recommendations and research needs for the next 10 years. Bulletin of the American Meteorological Society.

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2016 Publications

Allam, Bassem Liu, Q., Collier, J. L., & Allam, B. (2016). Seasonality of QPX disease in the Raritan Bay (NY) wild hard clam (Mercenaria mercenaria) population. Aquaculture Research. Aller, Josie Aller, Robert Beaupré, Steven Soulet, G., Skinner, L. C., Beaupré,...

2015 Publications

Allam, Bassem Wang, K., Espinosa, E. P., Tanguy, A., & Allam, B. (2015). Alterations of the immune transcriptome in resistant and susceptible hard clams (Mercenaria mercenaria) in response to Quahog Parasite Unknown (QPX) and temperature. Fish & Shellfish...

2014 Publications

Allam, Bassem Rubin, E., Espinosa, E. P., Koller, A., & Allam, B. (2014). Characterization of the secretome of the clam parasite, QPX. International Journal for Parasitology. Raghuvanshi, D. S., Kumari, K., Allam, B. K., & Singh, K. N. (2014). A convenient and...

2013 Publications

Allam, Bassem Allam B. , Carden WE, Ward JE, Ralph G, Winnicki S, Pales Espinosa E. (2013). Early host-pathogen interactions in marine bivalves: Evidence that the alveolate parasite Perkinsus marinus infects through the oyster mantle during rejection of pseudofeces....

2012 Publications

Allam, Bassem Allam B. 2012. Development of strategies to mitigate QPX disease in the hard clam Mercenaria mercenaria. Journal of Shellfish Research 31(1): 207-207. Sokolowski, M.S., B.A. Allam, K.J. Dunton, M.A. Clark, E.B. Kurtz and M.D.Fast. 2012. Immunophysiology...

2011 Publications

Allam, Bassem Rosa, M.E., J.E. Ward, S.E. Shumway, G.H. Wikfors, B.A. Holohan, E. Pales-Espinosa and B. Allam. 2011. The role of particle surface properties on feeding selectivity by Eastern oysters, Crassostrea virginica, and blue mussels, Mytilus edulis. Journal of...

2010 Publications

Allam, Bassem Pales Espinosa, E., M. Perrigault and B. Allam. 2010. Identification and molecular characterization of a mucosal lectin (MeML) from Mytilus edulis and its potential role in particle capture. Comparative Biochemistry and Physiology 156: 495-501....

2009 Publications

Allam, Bassem Perrigault M., A. Tanguy and B. Allam. 2009. Indentification and quantification of differentially expressed genes in the hard clam, Mercenaria mercenaria, in response to quahog parasite unknown (QPX). BMC Genomics 10: 377. doi:10.1186/1471-2164-10-377...