Publications

For a complete list of publications, please click HERE.

Selected Publications

  1. Li, K., Chatterjee, A., Qian, C., Lagree, K., Wang, Y., Becker, C.A., Freeman, M.R., Murali, R., Yang, W., Underhill, D.M. “Profiling Phagosome Proteins Identifies PD-L1 as a Fungal-binding Receptor”, Nature, 630: 736–743 (2024)
  2. Yan, Y.†, Zhou, B.†, Qian, C., Vasquez, A., Kamra, M., Chatterjee, A., Lee, Y.J., Yuan, X., Ellis, L., Di Vizio, D., Posadas, E., Kyprianou, N., Knudsen, B.S., Shah, K., Murali, R., Gertych, A., You, S., Freeman, M.R., Yang, W.*, “Receptor-interacting Protein Kinase 2 (RIPK2) Stabilizes c-Myc and is a Therapeutic Target in Prostate Cancer Metastasis”, Nature Communications, 13: 669 (2022) (*Corresponding author)
  3. Yan, Y., Zhou, B., Lee, Y.J., You, S., Freeman, M.R., Yang, W.* “BoxCar and Shotgun Proteomic Analyses Reveal Molecular Networks Regulated by UBR5 in Prostate Cancer”, Proteomics, 22: e2100172 (2022) (*Corresponding author)
  4. Yan, Y., Yeon, S.Y., Qian, C., You, S., Yang, W.*, “On the Road to Accurate Protein Biomarkers in Prostate Cancer Diagnosis and Prognosis: Current Status and Future Advances”, International Journal of Molecular Sciences, 22: 13537 (2021) (*Corresponding author)
  5. Wang, Y., Yang, W.*, “Proteome-scale Analysis of Protein S-acylation Comes of Age”, Journal of Proteome Research 20: 14-26 (2021) (*Corresponding author)
  6. Mariscal, J., Vagner, T., Kim, M., Zhou, B., Chin, A., Zandian, M., Freeman, M.R., You, S., Zijlstra, A.*, Yang, W.*, Di Vizio, D.* “Comprehensive Palmitoyl-proteomic Analysis Identifies Distinct Protein Signatures for Large and Small Cancer-derived Extracellular Vesicles”, Journal of Extracellular Vesicles, 9: 1764192 (2020) (*Co-corresponding authors)
  7. Zhou, B., Wang, Y., Yan, Y., Mariscal, J., Di Vizio, D., Freeman, M.R., Yang, W.*, “Low-background Acyl-biotinyl Exchange Largely Eliminates the Co-isolation of Non-S-acylated Proteins and Enables Deep S-acylproteomic Analysis”, Analytical Chemistry, 91: 9858-9866 (2019) (*Corresponding author)
  8. Zhou, B., Yan, Y., Wang, Y., You, S., Freeman, M., Yang, W.*, “Quantitative Proteomic Analysis of Prostate Tissue Specimens Identifies Deregulated Protein Complexes in Primary Prostate Cancer”, Clinical Proteomics 16: 15 (2019) (*Corresponding author)
  9. Yang, W., Freeman, M. R., Kyprianou, N. “The Personalization of Prostate Cancer Therapy by Phosphoproteomics”, Nature Reviews Urology, 15: 483-97 (2018)
  10. Zhou, B., An, M., Freeman, M.R., Yang, W.*, “Technologies and Challenges in Proteomic Analysis of Protein S-acylation”, Journal of Proteomics and Bioinformatics 7: 256 (2014) (*Corresponding author)
  11. Yang, W.†, Ramachandran, A.†, You, S.†, Jeong, H.B., Morley, S., Mulone, M.D., Logvinenko, T., Kim, J., Hwang, D., Freeman, M.R., Adam, R.M., “Integration of Proteomic and Transcriptomic Profiles Identifies a Novel PDGF-MYC Network in Human Smooth Muscle Cells”, Cell Communication and Signaling 12: 44. (2014) (†Co-first author)
  12. Yang, W., Kim, Y., Kim, T.K., Keay, S.K., Kim, K.P., Steen, H., Freeman, M.R., Hwang, D., Kim, J., “Integration Analysis of Quantitative Proteomics and Transcriptomics Data Identifies Potential Targets of Frizzled-8 Protein-related Antiproliferative Factor In Vivo”, BJU International 110: E1138-46 (2012)
  13. Dowal, L.†, Yang, W.†, Freeman, M.R., Steen, H., Flaumenhaft, R., “Proteomic Analysis of Palmitoylated Platelet Proteins”, Blood, 118: e62-73 (2011) (†Co-first Author)
  14. Yang, W., Chung, Y.G., Kim, Y., Kim, T.K., Keay, S.K., Zhang, C.O., Ji, M., Hwang, D., Kim, K.P., Steen, H., Freeman, M.R., Kim, J., “Quantitative Proteomics Identifies a β-catenin Network as an Element of the Signaling Response to Frizzled-8 Protein-Related Antiproliferative Factor”, Molecular & Cellular Proteomics, 10: M110.007492 (2011)
  15. Yang, W., Di Vizio, D., Kirchner, M., Steen, H., Freeman, M.R., “Proteome scale Characterization of Human S-acylated Proteins in Lipid Raft-enriched and Non-raft Membranes”, Molecular & Cellular Proteomics, 9: 54-70 (2010) [Top Research Highlight; Cited 300+]
  16. Yang, W.†, Cai, Q.†, Lui, V.W.Y., Everley, P.A., Kim, J., Bhola, N., Quesnelle, K.M., Zetter, B.R., Steen, H., Freeman, M.R., Grandis, J.R., “Quantitative Proteomics Analysis Reveals Molecular Networks Regulated by Epidermal Growth Factor Receptor Level in Head and Neck Cancer”, Journal of Proteome Research, 9: 3073-82 (2010) (†Co-first Author)
  17. Yang, W., Steen, H., Freeman, M. R., “Proteomic Approaches to the Analysis of Multiprotein Signaling Complexes”, Proteomics, 8: 832-51 (2008) [Cover Art]
  18. Yang, W., Liu, P., Liu, Y.S., Wang, Q.S., Tong, Y.P., Ji, J.G., “Proteomic Analysis of Rat Pheochromocytoma PC12 Cells”, Proteomics, 6: 2982-90 (2006) [Research Highlight]