For updated information and links to citations, please visit the google scholar website
bold lab member; * graduate student
Submitted
Speer K*, Dheilly NM, Perkins S. Microbiomes are integral to arthropod parasite conservation. Under revisions in Biological conservation
Huang I*, Dheilly NM, Sirotkin H, McElRoy A. Comparative transcriptomics implicate mitochondrial and neurodevelopmental impairments in larval zebrafish (Danio rerio) exposed to two selective serotonin reuptake inhibitors (SSRIs). Under revision in Ecotoxicology and Environmental Safety
2020
Jorge F, Dheilly NM, Poulin R. 2020 Persistence of a core microbiome through the ontogeny of a multi-host parasite. Frontiers in Microbiology. In press
Hahn MA*, Rosario K, Lucas P, Dheilly NM. 2020 Characterization of viruses in a tapeworm: phylogenetic position, vertical transmission, and transmission to the parasitized host. ISME J Link
Thomas F, Giraudeau M, Dheilly NM, Gouzerh F, Boutry J, Beckmann C, Biro PA, Hamede R, Abadie J, Labrut S, Bieuville M, Misse D, Bramwell G, Shultz A, Le Loc’h G, Roche B, Renaud F, Russell T, Ujvari B. 2020 Rare and unique adaptation to cancer in domesticated species: an untapped resource? Evolutionary applications 00, 1– 10 Link
2019
Dheilly NM. Martinez Martinez J, Rosario K, Brindley PJ, Fichorova RN, Kaye JZ, Kohl KD, Knoll LJ, Lukes J, Perkins SL, Poulin R, Schriml L, Thompson LR 2019 Parasite microbiome project: Grand challenges. Plos Pathogen 15(10): e1008028 Link
Dheilly NM, Ewald PW, Brindley PJ, Fichorova RN, Thomas F. 2019 Parasite-microbe-host interactions and cancer risk. Plos Pathogen 15(8), e1007912 Link
Hahn MA*, Dheilly NM. 2019 Genome characterization, prevalence and transmission mode of a novel picronavirus associated with the Threespine Stickleback fish (Gasterosteus aculeatus). Journal of Virology 93(9), e02277-18 Link
Portet A, Pinaud S, Chaparro C, Galinier R, Dheilly NM, Portela J, Charriere GM, Allienne J-F, Duval D, Gourbal B. 2019 Sympatric versus allopatric evolutionary contexts shape differential immune response in Biomphalaria/Schistosoma interaction. Plos Pathogen 15(3), e1007647 Link
2018
Fuirst M*, Hahn MA*, Dheilly NM, Thorne L Effects of urbanization on the foraging ecology and microbiota of the generalist seabird Larus argentatus. Plos One. 3(12): e0209200 Link
Smith, LC, Arriza V, Barela Hudgell MA, Barone G, Bodnar AG, Buckley KM, Cunsolo V, Dheilly NM, Franchi N, Fugmann SD, Furukawa R, Garcia-Arraras J, Henson JH, Hibino T, Irons ZH, Li C, Lun CM, Majeske AJ, Oren M, Pagliara P, Pinsino A, Raftos DA, Rast JP, Samasa B, Schillaci D, Schrankel CS, Stabili L, Stensväg K, Sutton E. 2018. Complexity of the Immune System in Echinoderms. In Comparative Immunology, pp 409-501 EL Cooper, ed. Springer Publisher.
2017
Dheilly NM, Bolnick D, Bordenstein S, Brindley PJ, Figueres C, Holmes EC, Martinez Martinez J, Phillips AJ, Poulin R, Rosario K 2017 Parasite Microbiome Project: Systematic investigation of microbiome dynamics within and across parasite-host interactions mSystem 2(4) Link
2016
Hahn MA*, Dheilly NM 2016 Experimental models to study the role of microbes in host-parasite interactions. Frontiers in Microbiology. 7(1300) Link
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Pinaud S*, Portela J*, Duval D, Nowacki F, Olive M-A, Allienne J-F, Galinier R, Dheilly NM, Kieffer-Jaquinod S, Mitta G, Théron A, and Gourbal B. 2016 A shift from cellular to humoral responses contributes to innate immune memory in the vector snail Biomphalaria glabrata. Plos Pathogens. 12(1): e1005361 Link
2015
Dheilly NM, Poulin R, Thomas F. 2015 Biological warfare: Microorganisms as drivers of host–parasite interactions. Infections Genetics and Evolution 34:251-259 Link
Cardinaud M*, Dheilly NM, Huchette S, Moraga D, Paillard C. 2015 The early stages of the immune response of the European abalone Haliotis tuberculata to a Vibrio harveyi infection. Journal of Developmental and Comparative Immunology 51(2):287-297 Link
Dheilly NM, Maure F*, Ravallec M, Galinier R, Doyon J, Duval D, Leger L, Volkoff A-N, Misse D, Nidelet S, Demolomb V, Brodeur J, Gourbal B, Thomas F, Mitta G. 2015 Who is the puppet master? Replication of a parasitic wasp-associated virus correlates with host behavior manipulation. Proceedings of the Royal Society B Biological Sciences 282(1803) Link
Data accessibility :
- Link to the de novo assembled transcriptome of Dinocampus coccinellae
- Link to the de novo assembled transcriptome of parasitized Coleomegilla maculata
- Raw fastq files were deposited on NCBI’s sequence read archive with references
PRJNA227418 for C. maculata samples and PRJNA227420 for D. coccinellae
samples. - Dinocampus coccinellae Paralysis Virus (DcPV) genome sequence was deposited under the EMBL GenBank accession KF843822.
Dheilly NM, Duval D, Mouahid G, Emans R, Allienne J-F, Genthon C, Dubois E, Du Pasquier L, Adema C, Grunau C, Mitta G, and Gourbal B. 2015 Diverse Immunoglobulin-like domain containing lectins in the snail Biomphalaria glabrata. Journal of Developmental and Comparative Immunology 48(1):234-243 Link
Data accessibility :
- Link to the de novo assembled transcriptome of Biomphalaria glabrata isolated from Brazil
- Sequences of the four C-type lectin-related proteins (CREPs) and the galectin-related protein (GREP) have been deposited in the NCBI database under the accession numbers KM975643, KM975644, KM975645, KM975646, KM975647, respectively
2014
Dheilly NM, Jouaux A*, Boudry P, Favrel P, Lelong C. 2014 Comparative transcriptomic profiling of gametogenesis of diploid and triploid Pacific oyster Crassostrea gigas: towards an understanding of partial sterility associated with triploidy. Plos One 9(11): e112094 Link
Data accessibility :
- Thirty two separate arrays were used to study the four gametogenetic stages of male and female diploid oysters. This dataset has previously been made available through NCBI via the Gene Expression Omnibus (GEO) data repository (GSE 27955).
- Thirty five new separate arrays were used and the complete dataset (raw data and normalized values including diploid samples) was made available through NCBI via the Gene Expression Omnibus (GEO) data repository (GSE40855)
Vidal-Dupiol J, Dheilly NM, Rondon R*, Grunau C, Cosseau C, Smith K, Freitag M, Adjeroud M, Mitta G. 2014 Thermal Stress Triggers Broad Pocillopora damicornis Transcriptomic Remodeling, while Vibrio coralliilyticus Infection Induces a More Targeted Immuno-Suppression Response. Plos One 9(9): e107672 Link
Data accessibility :
- Link to the de novo assembled transcriptome of Pocillopora damicornis.
- Link to fastq files of reads generated from adult P. damicornis healthy, exposed to thermal stress, exposed to non-virulent Vibrio coralliilyticus and exposed to virulent V. coralliilyticus
Dheilly NM 2014 Holobiont-holobiont interactions: redefining host-parasite interactions. Plos Path. 10(7): e1004093 Link
Dheilly NM, Adema C, Raftos DA, Gourbal B, Grunau C, Du Pasquier L. 2014 No more non-model species : the promise of Next Generation Sequencing for comparative immunology. Journal of Developmental and Comparative Immunology. 45(1) : 56-66 Link
2013
Fneich S*, Dheilly NM, Adema C, Rognon A, Reichelt M, Bulla J, Grunau C, Cosseau C. 2013. 5-methyl-cytosine and 5-hydroxy-methyl-cytosine in the genome of Biomphalaria glabrata, a snail intermediate host of Schistosoma mansoni. Parasites and Vectors. 6:167 Link
Vidal-Dupiol J*, Zoccola D, Tambutté E, Grunau C, Cosseau C, Smith KM, Freitag M, Dheilly NM, Allemand D, TambuttéS. 2013. Genes related to ion-transport and energy production are upregulated in response to CO2-driven pH decrease in corals: new insights from transcriptome analysis. PLoS One. 8(3):e58652 Link
Data accessibility :
- Link to the de novo assembled transcriptome of Pocillopora damicornis.
- Link to fastq files of reads generated from adult P. damicornis healthy (3 weeks at pH7.4), and exposed to acid stress (3 weeks at pH8.3)
Dheilly NM*, Haynes PA, Smith LC, Raftos DA, Nair SV. 2013. Shotgun proteomic analysis of the coelomic fluid of the purple sea urchin, Strongylocentrotus purpuratus. Journal of Developmental and Comparative Immunology. 40:35-50 Link
2012
Dheilly NM, Lelong C, Kellner K, Dubos M-P, Riviere G, Huvet A, Boudry P, Favrel P. 2012. Gametogenesis in an alternative hermaphrodite mollusk, the Pacific oyster Crassostrea gigas: a microarray-based analysis identifies stage and sex specific genes. Plos One 7(5): e36353 Link
Data accessibility :
- A total of 45 separate arrays were used and the complete dataset was made available through NCBI via the Gene Expression Omnibus (GEO) data repository (GSE 27955).
Dheilly NM*, Haynes PA, Raftos DA, Nair SV. 2012 Time course proteomic profiling of cellular responses to immunological challenge in sea urchins (Heliocidaris erythrogramma). Journal of Developmental and Comparative Immunology 37(2): 243-256 Link
2011
Smith L, Ghosh J*, Buckley KM, Clow LA, Dheilly NM*, Haug T, Henson JH, Li C, Lun CM, Majeske AJ*, Matranga V, Nair SV, Rast JP, Raftos DA, Roth M*, Sacchi S, Schrankel CC, Stensvåg K. 2011. Echinoderm Immunity. Advances in Experimental Medicines and Biology. 708: 260-301. Link
Dheilly NM*, Birch D, Nair SV, Raftos DA. 2011. Ultrastructural localization of a highly variable immune response protein (185/333) within coelomocytes of sea urchins. Journal of Immunology and Cell biology. 89: 861-869. Link
Dheilly NM, Lelong C, Huvet A, Favrel P. 2011. Development and application of a 31,952-feature microarray: Identification of reference genes and tissue-enriched expression patterns. BMC Genomics. 12: 468. Link
Data accessibility :
- The custom microarray design and the raw and normalized data is available from the Gene Expression Omnibus (GSE26265).
Dheilly NM*, Haynes P, Bove U, Nair SV, Raftos DA. 2011. Comparative proteomic analysis of a sea urchin (H. erythrogramma) antibacterial response revealed the Involvement of Apextrin and Calreticulin. Journal of Invertebrate Pathology. 106(2): 223-229. Link
2009
Dheilly NM*, Nair SV, Smith LC and Raftos DA. 2009. Highly variable immune-response proteins (185/333) from the sea urchin, Strongylocentrotus purpuratus: Proteomics analysis identifies diversity within and between individuals. Journal of Immunology. 182(4): 2203-12. Link
2007
Bowden L*, Dheilly NM*, Raftos DA and Nair SV. 2007. New Immune Systems: Pathogen-specific host defence, life history strategies and hypervariable immune-response genes of invertebrates. Invertebrate Survival Journal. 4: 127-36. Link