SBU high performance computing clusters: FAQ
web security: http://www.onguardonline.gov/topics/avoid-scams
Journals:
- Cerebral Cortex
- Journal of Neuroscience
- Journal of Cognitive Neuroscience
- Neuroimage
- Nature Neuroscience
- Nature Neurosceince Review
- Nature Reviews Disease Primers
Literature Search:
- Pubmed
- PsychInfo
- SBU e-journal
Neuroscience News: SFN news, networking
Statistics:
- Statistics How To
- Science Forum: Ten common statistical mistakes to watch out for when writing or reviewing a manuscript
- Ten simple rules for the computational modeling of behavioral data
- StatsSoft Electronic Statistics Textbook:
- UCLA online stats (e.g., R, SPSS, SAS, G Power, etc)
- JAMOVI User Manual to Create Reproducible R Code Using a Point and Click Interface
Unix shell, computational and programming tools:
- Introduction to the Unix shell
- Matlab tutorials by Software Carpentry (good for beginners)
- Python tutorials by Software Carpentry (good for beginners)
- Mathworks and matlab tutorial
- Mathworld
Neuroanatomy:
- BrainMaps.org
- Michigan State Univ’s Human Brain atlas
The Basics of MRI:
- Joseph Hornak’s online book
- Stuart Clare’s thesis on fMRI methods and applications
- how stuff works
- MRI tutor – Introduction to MRI physics
- Introduction to the Principles of MRI
- Carl D. Gregory (1998) MRI Artifact Gallery
MRI Safety:
- http://www.mrisafety.com/
- http://www.radiology.upmc.edu/MRsafety/
- http://www.fda.gov/cdrh/safety/mrisafety.html
- http://web.mit.edu/mitmri/userinfo.htm
- mri-research-safety-ethics_33826-1g0odn5
Major fMRI toolboxes:
NMR and fMRI software libraries and links
- Magnetic Resonance Sites on the Web
- Links to Internet resources related to fMRI
- NITRC- the source for neuroimaging tools and resources
- UCLA ICBM Software links
- Imaging databases: http://loni.usc.edu/?project=ICBM
- Resting state fMRI
fMRI Design and Analysis:
- Rik Henson on fMRI efficiency
- Dale’s Optimal sequence
- MRC CBSU Wiki (see spatial smooth, random field theory, etc)
fMRI online courses:
- fMRI for newbies (this is pretty good)
- MIT’s fMRI data acquisition and analysis
- Duke’s Fall 2008 fMRI course
- FMRIB’s FSL course
- SPM introduction
DTI
- http://iacl.ece.jhu.edu/~bennett/research.shtml
- http://www.sph.sc.edu/comd/rorden/workshop/fsl/dti/
- CATNAP DTI tools: http://iacl.ece.jhu.edu/~bennett/catnap/catnap.shtml
Spectroscopy: http://www.spectroscopynow.com/nmr
Psychological experiments
- PsychToolbox
- Eprime
- Presentation
- PsychoPy
Visual Stimulus Database (faces, scenes, objects, movies)
- http://pics.psych.stir.ac.uk/
- http://titan.cog.brown.edu:8080/TarrLab//stimuli
- http://calphotos.berkeley.edu/
Other interests: